View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_15 (Length: 277)
Name: NF9441_low_15
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 35520685 - 35520437
Alignment:
| Q |
13 |
agaccatgcaatgaccctcaatggaagaaaatattactttgcgaatgctgcaaaaataatgaaaatcaatttcacctttaagattactaggagtatatag |
112 |
Q |
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| T |
35520685 |
agaccatacaatgaccctcaatggaagaaaagattactttgcgaatgctgcaaaaataatgaaaatcaatttcacctttaagattactaggagtatatag |
35520586 |
T |
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| Q |
113 |
ttcaaacaactccacaactcgaaagttcatcaaattcaaaactttgtttatagtctccatagttcggagtctctggttagtgaagaaatcaaggagataa |
212 |
Q |
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| T |
35520585 |
ttcaaacaactccacaactcgaaagttcatcaaattcaaaactttgtttatagtctccatagttcggagtctctggttagtgaagagatcaaggagataa |
35520486 |
T |
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| Q |
213 |
agtttggaagaacttgacagaaaaactctaatgagccaccctttattag |
261 |
Q |
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| T |
35520485 |
agtttggaagaacttgacagaaaaactctaatgagccaccctttattag |
35520437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 38813794 - 38813848
Alignment:
| Q |
103 |
gagtatatagttcaaacaactccacaactcgaaagttcatcaaattcaaaacttt |
157 |
Q |
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| T |
38813794 |
gagtatatacttcagacaactcaacaactcgaaagttcatcaaatccaaaacttt |
38813848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 38825658 - 38825712
Alignment:
| Q |
103 |
gagtatatagttcaaacaactccacaactcgaaagttcatcaaattcaaaacttt |
157 |
Q |
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|||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
38825658 |
gagtgtatagttcaaacaactccacaacttgaatgttcatcaaattcaacacttt |
38825712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 35549061 - 35549115
Alignment:
| Q |
103 |
gagtatatagttcaaacaactccacaactcgaaagttcatcaaattcaaaacttt |
157 |
Q |
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|||||||| ||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
35549061 |
gagtatatccttcaaacaactccacaaatcgatagttcatcaaattcaatacttt |
35549115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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