View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9441_low_17 (Length: 276)
Name: NF9441_low_17
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 43585134 - 43585375
Alignment:
| Q |
17 |
gacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585134 |
gacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatct |
43585233 |
T |
|
| Q |
117 |
ggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585234 |
ggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggtt |
43585333 |
T |
|
| Q |
217 |
ccatagtagcatgctttctcctcaagtatgccacaggaggct |
258 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43585334 |
ccatagtggcatgctttctcctcaagtatgccacaggaggct |
43585375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 4190301 - 4190060
Alignment:
| Q |
17 |
gacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatct |
116 |
Q |
| |
|
|||||||| ||||||||||||||| || || ||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||||| |||||||| ||| |
|
|
| T |
4190301 |
gacatcagatgcagctcttgatccagcagggttactagcagttgctgtttgccatggttttgcactttttgttgctgttgcagttggtgccaacatttct |
4190202 |
T |
|
| Q |
117 |
ggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggtt |
216 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||||| |||| |||||||| || ||||||||||||||||||||||||||||| || |||||||| | |
|
|
| T |
4190201 |
ggtggtcatgtcaaccctgctgtcacctttggattggctgttggtggacagattaccatcctcactggtatcttctactggattgctcagcttcttggat |
4190102 |
T |
|
| Q |
217 |
ccatagtagcatgctttctcctcaagtatgccacaggaggct |
258 |
Q |
| |
|
|||| || ||||| ||||| ||| ||| || ||| ||||||| |
|
|
| T |
4190101 |
ccattgttgcatgttttcttctccagtttgtcactggaggct |
4190060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 23339461 - 23339534
Alignment:
| Q |
75 |
tttgctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacccagctgtgacctttgg |
148 |
Q |
| |
|
||||| |||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
23339461 |
tttgcactttttgttgctgtctctgttggtgctaacatttctggtggacatgtcaaccctgctgtcacttttgg |
23339534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 7655586 - 7655635
Alignment:
| Q |
84 |
tttgttgctgtttctgttggagccaacatatctggtggacatgtcaaccc |
133 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7655586 |
tttgttgccgtttctgttggagcaaacatatctggtggacatgtgaaccc |
7655635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 41418527 - 41418460
Alignment:
| Q |
78 |
gctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacccagctgtgacctt |
145 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||| || ||||||||||||||||| ||||| ||||| |
|
|
| T |
41418527 |
gctctctttgttgctgtctccgttggtgctaacatctccggtggacatgtcaaccccgctgtcacctt |
41418460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 3929549 - 3929665
Alignment:
| Q |
104 |
agccaacatatctggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgca |
203 |
Q |
| |
|
||||||||| || ||||||||| | ||||||||||| || ||||| || || ||||| || | ||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
3929549 |
agccaacatctcaggtggacatttgaacccagctgttacttttggattagccattggaggcaacatcaccatcctaactggtctcttctattggattgcc |
3929648 |
T |
|
| Q |
204 |
caacttcttggttccat |
220 |
Q |
| |
|
||| | ||||| ||||| |
|
|
| T |
3929649 |
caattgcttggctccat |
3929665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 52103130 - 52103081
Alignment:
| Q |
84 |
tttgttgctgtttctgttggagccaacatatctggtggacatgtcaaccc |
133 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
52103130 |
tttgtggctgtttctgttggtgcaaacatttctggtggacatgtgaaccc |
52103081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University