View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_19 (Length: 264)
Name: NF9441_low_19
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 4632595 - 4632365
Alignment:
| Q |
17 |
agtgcctattgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgatattc |
116 |
Q |
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| T |
4632595 |
agtgcctattgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgaaattc |
4632496 |
T |
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| Q |
117 |
gaatttaggacatcatacattataccatatatttttatctctatctttcatttacaaatttcatctaatcgtccccaaaaaataaattatctaatccatt |
216 |
Q |
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| T |
4632495 |
aaatttaggatatcatacattataccatatatttttatctctatttttcatttaaaaatttcatctaatcgtccctaaaaaataaattatttaatccatt |
4632396 |
T |
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| Q |
217 |
atggatttaaaaactaatacaccaaaataac |
247 |
Q |
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| T |
4632395 |
atggatttaaaaactaatacaccaaaataac |
4632365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 4638855 - 4638688
Alignment:
| Q |
19 |
tgcctattgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgatattcga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||| ||||||||| |||||| |
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| T |
4638855 |
tgcctattgatgttgtttcttagtgatttccctatctgctaatacgttttagaaaataattccctatttgatggctacaatttaattatttgaaattcga |
4638756 |
T |
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| Q |
119 |
atttaggacatcatacattataccatatatttttatctctatctttcatttacaaatttcatctaatc |
186 |
Q |
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| T |
4638755 |
atttaggatatgatacattataccatatatttttatctctatctttcatttacaattttcatctaatc |
4638688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 4669196 - 4669024
Alignment:
| Q |
21 |
cctattgatgttgtttcttagtgatttccctatcttctaatacgtttt-----acaaaataattctttattcgatggctacaattttattatttgatatt |
115 |
Q |
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||||||||||||||||| |||| ||| |||||| | |||||||||||| ||||||||||| |||||||||| |||||||||||||||| | ||| |
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| T |
4669196 |
cctattgatgttgtttcatagtaattcccctatttcctaatacgttttcatttacaaaataatttcctattcgatggatacaattttattatttaaaatt |
4669097 |
T |
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| Q |
116 |
cgaatttaggacatcat--acattataccatatatttttatctctatctttcatttacaaatttcatctaatc |
186 |
Q |
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||||||||||| ||||| | || || || |||||| ||| ||||||||||||||||||| ||| |||||||| |
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| T |
4669096 |
cgaatttaggatatcatgcatataatcccgtatattcttacctctatctttcatttacaattttgatctaatc |
4669024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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