View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_2 (Length: 487)
Name: NF9441_low_2
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 481776 - 481313
Alignment:
| Q |
20 |
actgtaggtttgtatattttaaaggtgagattagagcgtttgtaaaagataatgtgaggttaataaaaattgttataatgttatatgtacaaatgtgatc |
119 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
481776 |
actgtgggtttgtatatttttaaggtgagattagagcgtttgtaaaagataatgtgaggttaataaaaattgttataatgttatatgtacaaatgtgatc |
481677 |
T |
|
| Q |
120 |
gaactctggctactggcttaagagtttcaggtcacatacccgttaaaaccgttcaaatttggtatgagggaannnnnnnn--aatcatatatcgatatta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
481676 |
gaactctggctactggcttaagagtttcaggtcacatacccgttaaaaccgttcaaatttagtatgagggaatttattttttaatcatatatcgatatta |
481577 |
T |
|
| Q |
218 |
gtttctaaa-ggcaaacaattctagttagttcgtgaatatctaaccttttcaaattgaactttcctactccacttgatcaccggccactatcgacctaac |
316 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
481576 |
gtttctaaatggcaaacaattctagttagttcgtgaatatctaaccttttcaaattgaactttcctactccacttgatcaccggccactatcggcctaac |
481477 |
T |
|
| Q |
317 |
ctccatgtaaccctgcaaataatccctaggctcgactctctcaaaagtgttgaaatatgcatgaatgcatcaacatatattaatcagtaaacaacacata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
481476 |
ctccatgtaaccctgcaaataatccctaggctcgactctctc-caagtgttgaaatatgcatgaatgcatcaacatatattaatcagtaaacaacacata |
481378 |
T |
|
| Q |
417 |
atataacatgtttaacatttacataaataacaatctctttgttatacctgaagcagtattatcta |
481 |
Q |
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| T |
481377 |
atataacatgtttaacatttacataaataacaatctctttgttatacctgaagcagtatcatcta |
481313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 9250148 - 9250224
Alignment:
| Q |
361 |
aagtgttgaaatatgcatgaatgcatcaacatatattaatcagtaaacaacacataatataacatgtttaacattta |
437 |
Q |
| |
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||||| |||||| | |||| |||||| |||||||| |||||| ||||||||||||||||| |||||||| ||||||| |
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|
| T |
9250148 |
aagtgctgaaatgttcatgcatgcattaacatatactaatcaataaacaacacataatattacatgtttgacattta |
9250224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 449
Target Start/End: Original strand, 35208982 - 35209056
Alignment:
| Q |
375 |
gcatgaatgcatcaacatatattaatcagtaaacaacacataatataacatgtttaacatttacataaataacaa |
449 |
Q |
| |
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| T |
35208982 |
gcatgcatgcatcaacatatactaatcagtaaagaacacgtaatataacatatttaacatttacgtaaataacaa |
35209056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 469
Target Start/End: Complemental strand, 31250639 - 31250533
Alignment:
| Q |
362 |
agtgttgaaatatgcatgaatgcatcaacatatattaatcagtaaacaacacataatataacatgtttaacatttacataaataacaatctctttgttat |
461 |
Q |
| |
|
|||| |||||| | |||| |||||||| ||||||||| | | ||||||| ||||||| |||||||||||| | |||||||||||||||| ||||||| || |
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| T |
31250639 |
agtgctgaaattttcatgcatgcatcatcatatattact-actaaacaatacataatgtaacatgtttaataattacataaataacaatttctttgtcat |
31250541 |
T |
|
| Q |
462 |
acctgaag |
469 |
Q |
| |
|
|||||||| |
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|
| T |
31250540 |
acctgaag |
31250533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 469
Target Start/End: Complemental strand, 27661649 - 27661565
Alignment:
| Q |
385 |
atcaacatatattaatcagtaaacaacacataatataacatgtttaacatttacataaataacaatctctttgttatacctgaag |
469 |
Q |
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||||||||||| |||||| ||||||||| ||||||||||||||||| | ||| ||||||||||| | |||||||||||||||| |
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| T |
27661649 |
atcaacatatactaatcaataaacaacaaataatataacatgtttacaagttatgtaaataacaatttgtttgttatacctgaag |
27661565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 384 - 477
Target Start/End: Complemental strand, 12081481 - 12081388
Alignment:
| Q |
384 |
catcaacatatattaatcagtaaacaacacataatataacatgtttaacatttacataaataacaatctctttgttatacctgaagcagtatta |
477 |
Q |
| |
|
||||| |||||| |||| || ||| ||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||| ||||||| |
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| T |
12081481 |
catcatcatatactaataagaaaataacacataatataacttgtttaacatttatgtaaataaaaatgtctttgttatacctgaagtagtatta |
12081388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 3190782 - 3190874
Alignment:
| Q |
384 |
catcaacatatattaatcagtaaacaac---acataatataacatgtttaacatttacataaataacaatctctttgttatacctgaagcagt |
473 |
Q |
| |
|
|||||||||||| |||||||||||||| | | |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
3190782 |
catcaacatatactaatcagtaaacaaacaaaaaaaatataacatgtttaaaatttaagtaaataacaatttctttgttatacctgaagcagt |
3190874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 3199600 - 3199692
Alignment:
| Q |
384 |
catcaacatatattaatcagtaaacaac---acataatataacatgtttaacatttacataaataacaatctctttgttatacctgaagcagt |
473 |
Q |
| |
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|||||||||||| |||||||||||||| | | |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
3199600 |
catcaacatatactaatcagtaaacaaacaaaaaaaatataacatgtttaaaatttaagtaaataacaatttctttgttatacctgaagcagt |
3199692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 3208438 - 3208530
Alignment:
| Q |
384 |
catcaacatatattaatcagtaaacaac---acataatataacatgtttaacatttacataaataacaatctctttgttatacctgaagcagt |
473 |
Q |
| |
|
|||||||||||| |||||||||||||| | | |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
3208438 |
catcaacatatactaatcagtaaacaaacaaaaaaaatataacatgtttaaaatttaagtaaataacaatttctttgttatacctgaagcagt |
3208530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 48897336 - 48897420
Alignment:
| Q |
381 |
atgcatcaacatatattaatcagtaaacaacacataatataacatgtttaacatttacataaataacaatctctttgttatacct |
465 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||| | |||||||||| |||||| ||||||| ||| || ||||||||||| |
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|
| T |
48897336 |
atgcatcaacatatattaatcattgtgaaacgcataacaaaacatgtttatcatttatttaaataagaatttcattgttatacct |
48897420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 438
Target Start/End: Original strand, 22507888 - 22507987
Alignment:
| Q |
338 |
atccctaggctcgactctctcaaaagtgttgaaatatgcatgaatgcatcaacatatattaatcagtaaacaacacataatataacatgtttaacattta |
437 |
Q |
| |
|
|||||||||| ||| || |||||| ||||| ||||||| | | | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22507888 |
atccctaggcgcgaatccctcaaa-gtgttaaaatatgaacgcctacatctacatatattaatatgtaaacaacacataatataacatgtttaacattta |
22507986 |
T |
|
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