View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_22 (Length: 251)
Name: NF9441_low_22
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44898900 - 44898661
Alignment:
| Q |
1 |
tagttaaagtttagtggttcgcattggctatataagttttttgtactctttgatgtaatcaatattctcattatcacacaatttgatgtttgtataacca |
100 |
Q |
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| T |
44898900 |
tagttaaagtttagtggttcgcattggctatataagttttttgtactctttgatgtaatcaatattctcattatcacacaatttgatgtttgtataacca |
44898801 |
T |
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| Q |
101 |
actgttaaaattacctggtgaaagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44898800 |
actgttaaaattacctggtgaaagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaa |
44898701 |
T |
|
| Q |
201 |
caggtaataagataatggccatattcaatttgagtgtctc |
240 |
Q |
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| T |
44898700 |
caggtaataagataatggccatattcaatttgagtgtctc |
44898661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 44914713 - 44914575
Alignment:
| Q |
102 |
ctgttaaaattacctggtgaaagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaac |
201 |
Q |
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|||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||||| |||||||||| ||||||||| || | ||||||||| ||||| |
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| T |
44914713 |
ctgtaaaacttaccttgtggaagttgaggttatcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaac |
44914614 |
T |
|
| Q |
202 |
aggtaataagataatggccatattcaatttgagtgtctc |
240 |
Q |
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| T |
44914613 |
aggtaacaagataatagccatgttcaatttgagtgtctc |
44914575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 44885462 - 44885333
Alignment:
| Q |
111 |
ttacctggtgaaagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataa |
210 |
Q |
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|||||| ||| |||| ||||||||||| |||||||||| |||||||||||||||||||| ||| ||||| || || |||||||||||||||||||| || |
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| T |
44885462 |
ttaccttgtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaa |
44885363 |
T |
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| Q |
211 |
gataatggccatattcaatttgagtgtctc |
240 |
Q |
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||||| ||||| ||||||||||||||||| |
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| T |
44885362 |
gataagagccatgttcaatttgagtgtctc |
44885333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 237
Target Start/End: Complemental strand, 39982710 - 39982580
Alignment:
| Q |
107 |
aaaattacctggtgaaagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggta |
206 |
Q |
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|||||||||| |||||| | |||| ||||||||||||||| | ||||||||||||||| | ||| ||||| || | |||||||||||||||||| | |
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| T |
39982710 |
aaaattaccttgtgaaaattgaggccatcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggca |
39982611 |
T |
|
| Q |
207 |
ataagataatggccatattcaatttgagtgt |
237 |
Q |
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|||||||||||||||| |||||||| ||||| |
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| T |
39982610 |
ataagataatggccatgttcaatttaagtgt |
39982580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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