View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_28 (Length: 244)
Name: NF9441_low_28
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3978275 - 3978041
Alignment:
| Q |
1 |
ccagccctctctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatcaggttggt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3978275 |
ccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgcgcagagggctttcaccaatttgacataatcaggttggt |
3978176 |
T |
|
| Q |
101 |
cacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978175 |
cacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactt |
3978076 |
T |
|
| Q |
201 |
tctaagcaccagctgcagggcagtcatgatgtcca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3978075 |
tctaagcaccagctgcagggcagtcatgatgtcca |
3978041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 39233496 - 39233698
Alignment:
| Q |
1 |
ccagccctctctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatcaggttggt |
100 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||| ||||||||||| || |||| || | || |||||||||||||| ||||| ||||||||||||| |
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| T |
39233496 |
ccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttcagcacaaagggctttcaccaacttgacgtaatcaggttggt |
39233595 |
T |
|
| Q |
101 |
cacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactt |
200 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
39233596 |
cacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactttcatgaagaccgcgtgcaagtccaccataagcacgagactt |
39233695 |
T |
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| Q |
201 |
tct |
203 |
Q |
| |
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||| |
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| T |
39233696 |
tct |
39233698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 827076 - 826842
Alignment:
| Q |
1 |
ccagccctctctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatcaggttggt |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||| | |||||||||||||| | || || || || || | ||| ||||| ||||| |||| |
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| T |
827076 |
ccagcccattctccaagtgtcttcgcactaggaactgtcagaagactaacattgtgctcagcacaaagagccttgacaagtttaacatagtcaggctggt |
826977 |
T |
|
| Q |
101 |
cacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactt |
200 |
Q |
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|||||||||| || ||||||||||||||| | | | ||||||||| ||||||||||||||||| || || ||||||||||||||||| || ||||| |
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| T |
826976 |
cacaatcttctgcaagaacacaaagctgtcctgtgttcttctcaattacttttgcaccttcatggaggccacgtgcaagaccaccatatgccaatgactt |
826877 |
T |
|
| Q |
201 |
tctaagcaccagctgcagggcagtcatgatgtcca |
235 |
Q |
| |
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|||||||| || |||| ||||||||||||||||| |
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|
| T |
826876 |
cctaagcacaagttgcaaggcagtcatgatgtcca |
826842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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