View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_3 (Length: 370)
Name: NF9441_low_3
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 52602790 - 52602440
Alignment:
| Q |
19 |
gatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtagatataatttcatcaggttgtcc |
118 |
Q |
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| T |
52602790 |
gatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtacatataatttcatcaggttgtcc |
52602691 |
T |
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| Q |
119 |
att----attaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtga |
214 |
Q |
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| T |
52602690 |
attcattattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtga |
52602591 |
T |
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| Q |
215 |
gaattatgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattcttaatatttt |
314 |
Q |
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| T |
52602590 |
ggattatgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattcttaatatttt |
52602491 |
T |
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| Q |
315 |
aagcaaggggtgcatgcaagaacaggcagtatgcagaagttaactccaaac |
365 |
Q |
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| T |
52602490 |
aagcaaggggtgcatgcaagaacaggtagtatgcagaagtgaactccaaac |
52602440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 120 - 365
Target Start/End: Complemental strand, 52623436 - 52623191
Alignment:
| Q |
120 |
ttattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtgagaatt |
219 |
Q |
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| T |
52623436 |
ttattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtgaggatt |
52623337 |
T |
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| Q |
220 |
atgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattcttaatattttaagca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52623336 |
atgatggaaaaaaggacgcaaagaataaatgagattagaaattaattgtaaggttgaaatgttggaatatatactgtcttaattcttaatattttaagca |
52623237 |
T |
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| Q |
320 |
aggggtgcatgcaagaacaggcagtatgcagaagttaactccaaac |
365 |
Q |
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| T |
52623236 |
aggggtgcatgcaagaacaggtagtatgcagaagtgaactccaaac |
52623191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 52623788 - 52623679
Alignment:
| Q |
19 |
gatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtagatataatttcatcaggttgtcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52623788 |
gatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtgcatataatttcatcaggttgtcc |
52623689 |
T |
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| Q |
119 |
attattaatt |
128 |
Q |
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|||||||||| |
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| T |
52623688 |
attattaatt |
52623679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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