View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_35 (Length: 201)
Name: NF9441_low_35
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 33498303 - 33498131
Alignment:
| Q |
13 |
tatggtggttggcttagtcccctaattcagtaaatccgctgctctcattcttttagtcaaaagtttaatataatgctaaagaatttggaacttttctcac |
112 |
Q |
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| T |
33498303 |
tatggtggttggcttagtcccctaattcagtaaatccgctgctctcattcttttagtcaaaagtttaatatgatgctaaagaatttggaacttttctcac |
33498204 |
T |
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| Q |
113 |
ttcttaaaatgaattgttctgtgagctgataaactctcttgcacaactgtagtccaaaagtttgagttaagag |
185 |
Q |
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| T |
33498203 |
ttcttaaaatgaattgttctgtgagctgatgaactctcttgcacaactgtagtccaaaagtttgagttaagag |
33498131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 33518544 - 33518617
Alignment:
| Q |
109 |
tcacttcttaaaatgaattgttctgtgagctgataaactctcttgcacaactgtagtccaaaagtttgagttaa |
182 |
Q |
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| T |
33518544 |
tcacttcttaaaatgaattgtccaacgagttgatgaaatctcttgcacaattgtagtccaaaagtttgagttaa |
33518617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 33518298 - 33518354
Alignment:
| Q |
13 |
tatggtggttggcttagtcccctaattcagtaaatccgctgctctcattcttttagt |
69 |
Q |
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||||||||||||||||||||||||||||||||||| | || ||||| || ||||||| |
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| T |
33518298 |
tatggtggttggcttagtcccctaattcagtaaattcactactctcctttttttagt |
33518354 |
T |
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