View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9441_low_4 (Length: 352)

Name: NF9441_low_4
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9441_low_4
NF9441_low_4
[»] chr4 (22 HSPs)
chr4 (12-339)||(29543871-29544210)
chr4 (249-339)||(52673156-52673246)
chr4 (249-339)||(46079298-46079388)
chr4 (249-339)||(44015370-44015460)
chr4 (249-339)||(53406447-53406537)
chr4 (255-339)||(29693237-29693321)
chr4 (294-339)||(31455897-31455942)
chr4 (303-339)||(1208706-1208742)
chr4 (292-339)||(5052131-5052178)
chr4 (250-313)||(9116204-9116267)
chr4 (250-329)||(11077820-11077899)
chr4 (288-339)||(29724346-29724397)
chr4 (293-339)||(50041816-50041862)
chr4 (293-339)||(50049038-50049084)
chr4 (291-339)||(19473051-19473099)
chr4 (291-339)||(36498599-36498647)
chr4 (291-339)||(52198391-52198439)
chr4 (291-339)||(53176882-53176930)
chr4 (302-339)||(30643603-30643640)
chr4 (303-339)||(40202260-40202296)
chr4 (249-281)||(46079442-46079474)
chr4 (299-339)||(51853509-51853549)
[»] chr2 (18 HSPs)
chr2 (249-339)||(41069631-41069721)
chr2 (249-339)||(6752032-6752122)
chr2 (253-333)||(31750511-31750591)
chr2 (276-339)||(23395976-23396039)
chr2 (249-313)||(19037015-19037079)
chr2 (276-339)||(11226189-11226252)
chr2 (292-339)||(39729029-39729076)
chr2 (249-313)||(15141938-15142002)
chr2 (292-339)||(32832594-32832641)
chr2 (278-339)||(13477676-13477737)
chr2 (291-339)||(28640140-28640188)
chr2 (288-339)||(40204724-40204775)
chr2 (249-286)||(19037162-19037199)
chr2 (249-286)||(39707497-39707534)
chr2 (303-339)||(36562752-36562788)
chr2 (292-339)||(33433419-33433466)
chr2 (249-286)||(3496879-3496916)
chr2 (291-339)||(38529880-38529928)
[»] chr8 (15 HSPs)
chr8 (249-339)||(4834928-4835018)
chr8 (249-313)||(16499778-16499842)
chr8 (249-313)||(16508703-16508767)
chr8 (249-313)||(33938561-33938625)
chr8 (249-313)||(16467657-16467721)
chr8 (291-339)||(44132873-44132921)
chr8 (292-339)||(20896188-20896235)
chr8 (291-339)||(1898097-1898145)
chr8 (249-281)||(16508845-16508877)
chr8 (292-339)||(44077745-44077792)
chr8 (294-336)||(14847452-14847494)
chr8 (289-323)||(41474239-41474273)
chr8 (249-286)||(16499910-16499947)
chr8 (291-339)||(35910623-35910669)
chr8 (291-339)||(42127183-42127231)
[»] chr1 (26 HSPs)
chr1 (249-339)||(48914943-48915033)
chr1 (249-339)||(48915334-48915424)
chr1 (249-339)||(48915135-48915223)
chr1 (249-339)||(50539686-50539776)
chr1 (249-339)||(19456269-19456358)
chr1 (249-313)||(48843434-48843498)
chr1 (258-339)||(26478605-26478686)
chr1 (252-313)||(27907761-27907822)
chr1 (292-339)||(24671199-24671246)
chr1 (291-339)||(19431390-19431438)
chr1 (292-339)||(3950296-3950343)
chr1 (291-339)||(11872188-11872236)
chr1 (291-339)||(44448498-44448546)
chr1 (249-313)||(51748610-51748674)
chr1 (293-339)||(49177438-49177483)
chr1 (291-339)||(4213840-4213888)
chr1 (291-339)||(17368396-17368444)
chr1 (291-335)||(50175962-50176006)
chr1 (298-339)||(5398029-5398070)
chr1 (276-313)||(27032295-27032332)
chr1 (249-286)||(27907660-27907697)
chr1 (298-339)||(46325456-46325497)
chr1 (298-339)||(46325597-46325638)
chr1 (303-339)||(15106251-15106287)
chr1 (299-339)||(17923869-17923909)
chr1 (303-339)||(45781221-45781257)
[»] chr7 (20 HSPs)
chr7 (249-339)||(2628394-2628484)
chr7 (250-339)||(9488728-9488818)
chr7 (258-339)||(32279261-32279342)
chr7 (249-313)||(34328163-34328227)
chr7 (249-313)||(46425286-46425350)
chr7 (249-313)||(16876685-16876749)
chr7 (250-313)||(23185873-23185935)
chr7 (249-313)||(18867896-18867960)
chr7 (288-337)||(33957478-33957527)
chr7 (292-339)||(11369056-11369103)
chr7 (292-339)||(37685191-37685238)
chr7 (288-339)||(42971640-42971691)
chr7 (249-286)||(16876813-16876850)
chr7 (249-286)||(23185999-23186036)
chr7 (302-339)||(43368497-43368534)
chr7 (288-332)||(26825469-26825513)
chr7 (304-339)||(7352787-7352822)
chr7 (301-338)||(22815819-22815856)
chr7 (291-339)||(22715816-22715864)
chr7 (291-339)||(32204785-32204833)
[»] chr5 (20 HSPs)
chr5 (249-339)||(34928837-34928927)
chr5 (253-339)||(22658870-22658956)
chr5 (249-339)||(14151900-14151990)
chr5 (253-339)||(27554885-27554971)
chr5 (249-339)||(2651665-2651746)
chr5 (249-310)||(22473597-22473657)
chr5 (288-340)||(22029847-22029899)
chr5 (249-313)||(37480340-37480404)
chr5 (289-339)||(19824627-19824677)
chr5 (291-339)||(33953171-33953219)
chr5 (291-334)||(33922862-33922905)
chr5 (262-338)||(14139407-14139481)
chr5 (291-339)||(14281809-14281858)
chr5 (291-339)||(8230778-8230826)
chr5 (292-339)||(22653523-22653570)
chr5 (293-339)||(18267856-18267902)
chr5 (302-339)||(18623597-18623634)
chr5 (291-341)||(29805449-29805503)
chr5 (291-339)||(3622202-3622250)
chr5 (295-339)||(9956650-9956694)
[»] chr3 (19 HSPs)
chr3 (249-339)||(10688651-10688741)
chr3 (249-339)||(47548879-47548969)
chr3 (249-339)||(50700057-50700145)
chr3 (249-313)||(4037199-4037263)
chr3 (249-313)||(39350751-39350815)
chr3 (249-313)||(39994249-39994313)
chr3 (249-313)||(11233564-11233628)
chr3 (297-333)||(132151-132187)
chr3 (292-339)||(39485471-39485518)
chr3 (292-339)||(46348393-46348440)
chr3 (250-313)||(49279547-49279609)
chr3 (249-286)||(4037098-4037135)
chr3 (291-339)||(16278815-16278863)
chr3 (291-339)||(34305830-34305878)
chr3 (253-299)||(34272415-34272461)
chr3 (293-339)||(42466959-42467005)
chr3 (291-339)||(16013508-16013556)
chr3 (298-338)||(24581539-24581579)
chr3 (291-339)||(39488481-39488529)
[»] chr6 (17 HSPs)
chr6 (249-313)||(9928319-9928383)
chr6 (252-313)||(22469757-22469818)
chr6 (291-339)||(457692-457740)
chr6 (249-339)||(8585745-8585834)
chr6 (292-339)||(28963591-28963638)
chr6 (288-334)||(5522480-5522526)
chr6 (278-339)||(26847183-26847244)
chr6 (291-339)||(24226101-24226149)
chr6 (289-339)||(167180-167230)
chr6 (280-339)||(9549409-9549472)
chr6 (291-339)||(512786-512834)
chr6 (291-339)||(6793537-6793585)
chr6 (250-313)||(31743916-31743980)
chr6 (249-286)||(22469656-22469693)
chr6 (250-286)||(9928219-9928255)
chr6 (291-339)||(28729979-28730027)
chr6 (290-338)||(32267017-32267065)
[»] scaffold0176 (1 HSPs)
scaffold0176 (249-313)||(15149-15213)
[»] scaffold0085 (1 HSPs)
scaffold0085 (291-339)||(31614-31662)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 29543871 - 29544210
Alignment:
Q  12 atagggttaagggaaacacactttggagctttgtctcgaaaaacttgaaacaatgggaatttatccttacataagttgatcttgcttacaataatcaaac 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29543871 atagggttaagggaaacacactttggagctttgtctggaaaaacttgaaacaatgggaatttatccttaaataagttgatcttgcttacaataatcaaac 29543970  T
Q  112 taatcaagctgcaaaaaagtgtccttttttaggcggtataaagaacttgacgacatatcccacttgaattatccccctcatcagataattaatattttag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29543971 taatcaagctgcaaaaaagtgtccttttttaggcggtataaagaacttgacgacatatcccacttgaattatccccctcatcagataattaatattttag 29544070  T
Q  212 cgtagatgcaaaacgcatagcaaaagagataaagaag------------cttgggtgccatagttttttggtgccattggtgacatatgtttattttaga 299  Q
    |||||||||||||||||||||||||||||||||||||            |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  29544071 cgtagatgcaaaacgcatagcaaaagagataaagaagctgtgtgaaatacttgggtgtcatagttttttggtgccattggtgacatatgttcattttaga 29544170  T
Q  300 tgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  29544171 tgagagaaaatgataaatgaatgattaaaataaattattt 29544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 52673156 - 52673246
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  52673156 cttgggtgccatagttttttggtgtcattggtgacataggttcattttagatgagagagaatgatgaatgaataattaaaataaattattt 52673246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 46079298 - 46079388
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||| || ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  46079298 cttggatgacatagttttttggtgccattgatgacataggttcattttagatgagagagaatgatcaatgaatgattaaaataaattattt 46079388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 44015370 - 44015460
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||| ||| ||||| ||||||||  ||||||||||||  || |||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  44015370 cttgagtgacatagctttttggtaacattggtgacattagtgtattttagatgagaaagaatgatagatgaatgattaaaataaattattt 44015460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 53406447 - 53406537
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| ||||  |||||| |||| ||||||| | ||||| ||||||||||| ||| |||||||||| ||| |||||||||||||||||    
T  53406447 cttgggtgtcataactttttgatgccgttggtgatacatgttcattttagatgaaagaaaatgatgaataaataattaaaataaattattt 53406537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 29693321 - 29693237
Alignment:
Q  255 tgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||| ||||||| |||||||| | ||||   || |||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  29693321 tgccataattttttgatgccattgataacatggattcattttagatgagagagaatgataaataaataattaaaataaattattt 29693237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 31455897 - 31455942
Alignment:
Q  294 tttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  31455897 tttagatgaaagagaatgaagaatgaatgattaaaataaattattt 31455942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 1208706 - 1208742
Alignment:
Q  303 gagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||||||||||||||||    
T  1208706 gagagaatgatgaatgaatgattaaaataaattattt 1208742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 5052178 - 5052131
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  5052178 attttaaatgagagagaatgataaataaatgattaaaataaattattt 5052131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 9116204 - 9116267
Alignment:
Q  250 ttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||| |||||||||  ||||| ||||||| ||| ||||||||||| ||||||||||    
T  9116204 ttgggtgccataattttttggtctcattgatgacataggttcattttagatgaaagagaatgat 9116267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 11077820 - 11077899
Alignment:
Q  250 ttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaa 329  Q
    ||||||| |||||||||| |||| |||||||| |||  ||| ||||| |||| |||||||||||  ||||||||||||||    
T  11077820 ttgggtgacatagtttttgggtgacattggtggcattagttcattttggatgggagagaatgatctatgaatgattaaaa 11077899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 29724346 - 29724397
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||| |||||||||| ||||||| || |||||||||||||||||||||||||    
T  29724346 gtttgttttagatgatagagaataataaatgaatgattaaaataaattattt 29724397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 50041816 - 50041862
Alignment:
Q  293 ttttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||    
T  50041816 ttttagatgagagataatgatagatgaatgattaaaataaattattt 50041862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 50049038 - 50049084
Alignment:
Q  293 ttttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||    
T  50049038 ttttagatgagagataatgatagatgaatgattaaaataaattattt 50049084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 19473051 - 19473099
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||| |||||| ||||||  ||||||||||||||||||||||||    
T  19473051 tattttagaggagagaaaatgatacatgaatgattaaaataaattattt 19473099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 36498599 - 36498647
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||| |||||  |||| |||||||||||||||||||    
T  36498599 tattttagatgagagaggatgatagatgagtgattaaaataaattattt 36498647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 52198439 - 52198391
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||| ||||||  || |||||||||||||||||||||    
T  52198439 tattttagatgagagataatgatagataaatgattaaaataaattattt 52198391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 53176930 - 53176882
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| |||  || ||||||||||||||||||||||||||||    
T  53176930 tattttagatgacagaagataatgaatgaatgattaaaataaattattt 53176882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 30643603 - 30643640
Alignment:
Q  302 agagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  30643603 agagataatgatggatgaatgattaaaataaattattt 30643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 40202260 - 40202296
Alignment:
Q  303 gagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||| |||||||||||||| |||||||||||||||||    
T  40202260 gagataatgatgaatgaattattaaaataaattattt 40202296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 46079474 - 46079442
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtg 281  Q
    |||||||||||||||||||||||| ||||||||    
T  46079474 cttgggtgccatagttttttggtgtcattggtg 46079442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 51853549 - 51853509
Alignment:
Q  299 atgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||| ||||||||| |||||||||| ||||||    
T  51853549 atgagagagaatgttgaatgaataattaaaataacttattt 51853509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 41069631 - 41069721
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41069631 cttgggtgccataattttttggtgccattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattattt 41069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 6752032 - 6752122
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  6752032 cttgggtgccatagttttttggtaccattgatgacataagttcattttagatgagagagaatgataaatgaatgattaaaataaattattt 6752122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 31750591 - 31750511
Alignment:
Q  253 ggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaa 333  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||    
T  31750591 ggtgccatagtttgttggtgccattggtgacatatattcattttagatcacagagaatgatgaatgaatgattaaaataaa 31750511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 23396039 - 23395976
Alignment:
Q  276 ttggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  23396039 ttggtgacataggttcattttagatgagagagaatgataaatgaatgattaaaataaattattt 23395976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 19037015 - 19037079
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  19037015 cttgggtgccatagttttttagtgccattggtgacataggttcattttagatgaaagagaatgat 19037079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 11226252 - 11226189
Alignment:
Q  276 ttggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  11226252 ttggtgacataggttcattttaaatgagagagaatgacgaatgaatgattaaaataaattattt 11226189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 39729076 - 39729029
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39729076 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 39729029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 15142002 - 15141938
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||    
T  15142002 cttgggtgccatagttttttgatgtcattggtgacataggttcattttagatgaaagagaatgat 15141938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 32832594 - 32832641
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  32832594 attttagatgagagagaatgttggatgaatgattaaaataaattattt 32832641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 13477676 - 13477737
Alignment:
Q  278 ggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||  | |||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  13477676 ggtgacataaatgtattttggataagagagaatgatgaatgaatgattaaaataatttattt 13477737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 28640140 - 28640188
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  28640140 tattttagatgaaagagaatgatagatgaatgattaaaataaattattt 28640188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 40204724 - 40204775
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||| |||||||||||||||  |||||| |||||||||||||||||    
T  40204724 gtttattttacatgagagagaatgatagatgaattattaaaataaattattt 40204775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 19037199 - 19037162
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  19037199 cttgggtgccatagttttttggtgccattggtgccata 19037162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 39707534 - 39707497
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39707534 cttgggtgccatagttttttggtgccattggtgccata 39707497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 36562752 - 36562788
Alignment:
Q  303 gagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||| |||||||||||||||    
T  36562752 gagagaatgatgaatgaatgagtaaaataaattattt 36562788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 33433419 - 33433466
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||| ||| ||||||||  ||||||||||||||||||||||||||||    
T  33433419 atttttgataagagagaaaaatgaatgaatgattaaaataaattattt 33433466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 3496916 - 3496879
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  3496916 cttgggtgccatagttctttggtgccattggtgtcata 3496879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 38529880 - 38529928
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||| ||||||||||| ||| ||  ||||||||||||||||||||||||    
T  38529880 tattctagatgagagataataatttatgaatgattaaaataaattattt 38529928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 4834928 - 4835018
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4834928 cttgggtgccatagttttttggtgatattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattattt 4835018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 16499778 - 16499842
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||| ||||||||| ||| ||| |||||| |||||||||||||||    
T  16499778 cttgggtgccatagttttttggtgacattggtgatataggttcattttatatgagagagaatgat 16499842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 16508703 - 16508767
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||| |||||||||| ||||||||| ||| ||| |||||| |||||||||||||||    
T  16508703 cttgggtgccatatttttttggtgacattggtgatataggttcattttatatgagagagaatgat 16508767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 33938561 - 33938625
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| | ||| ||||||    
T  33938561 cttgggtgccatagttttttggtgccattgatgacataggttcattttagataaaagataatgat 33938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 16467721 - 16467657
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||| |||||||||||||| ||||||||| ||| ||| |||||| |||| ||||||||||    
T  16467721 cttgggtgcgatagttttttggtgacattggtgatataggttcattttatatgaaagagaatgat 16467657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 44132873 - 44132921
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  44132873 tattttagatgagagataatgatagatgaatgattaaaataaattattt 44132921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 20896188 - 20896235
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  20896188 attttagatgagagataatgatatatgaatgattaaaataaattattt 20896235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 1898097 - 1898145
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||  || | |||||||||||||||||||    
T  1898097 tattttagatgagagagaatgatatataactgattaaaataaattattt 1898145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 16508877 - 16508845
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtg 281  Q
    |||||||||||||||||||||||||||||||||    
T  16508877 cttgggtgccatagttttttggtgccattggtg 16508845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 44077745 - 44077792
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||| ||||| |||||||| ||| |||||||||||||||||    
T  44077745 attttagatgaaagagagtgatgaataaataattaaaataaattattt 44077792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 14847494 - 14847452
Alignment:
Q  294 tttagatgagagagaatgatgaatgaatgattaaaataaatta 336  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  14847494 tttagatgagagagaatgttgggtgaatgattaaaataaatta 14847452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 41474239 - 41474273
Alignment:
Q  289 tttattttagatgagagagaatgatgaatgaatga 323  Q
    ||||||||| |||||||||||||||||||||||||    
T  41474239 tttattttacatgagagagaatgatgaatgaatga 41474273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 16499947 - 16499910
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  16499947 cttgggttccatagttttttggtgccattggtgccata 16499910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 35910669 - 35910623
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||  |||| |||||||||||||||||||| ||||    
T  35910669 tattttagatgagagag--tgataaatgaatgattaaaataaatcattt 35910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 42127183 - 42127231
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||| || ||||| |||||  |||||||||||||||||||||||    
T  42127183 tattttagaagaaagagagtgatgtttgaatgattaaaataaattattt 42127231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 48914943 - 48915033
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48914943 cttgggtgccatagtttttttgtgacattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattattt 48915033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 48915334 - 48915424
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48915334 cttgggtgccatagtttttttgtgacattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattattt 48915424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 48915135 - 48915223
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  48915135 cttgggtgccatagtttttttgtgacattggtgacataggttcattttagat--gagagaatgatgaatgaatgattaaaataaattattt 48915223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 50539686 - 50539776
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||| |||||| ||||||||||||| ||| |||||||| |||||| ||||||||||  ||||||||||||||||||||    
T  50539686 cttgggtgccatagtttattggtgtcattggtgacataagttcattttagaagagagataatgatgaatagatgattaaaataaattattt 50539776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 19456269 - 19456358
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||| |||| |||| |||||||||||||  || ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  19456269 cttgggtgccatagctttt-ggtgtcattggtgacatagattcattttagatgagagagaatgatgaatagatgattaaaataaattattt 19456358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 48843498 - 48843434
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  48843498 cttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 48843434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 26478686 - 26478605
Alignment:
Q  258 catagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||| |||  |||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  26478686 catagttttttagtgttattggtgacaaaggttaattttagatgagagagaatgatgaatgaataattaaaataaatcattt 26478605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 27907822 - 27907761
Alignment:
Q  252 gggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  27907822 gggtgccatagttttttggtgtcattggtgacataggttcattttagatgaaagagaatgat 27907761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 24671246 - 24671199
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24671246 attttagatgagagagagtgatgaatgaatgattaaaataaattattt 24671199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 19431390 - 19431438
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  19431390 tattttagatgagacagaatgatggatgaatgattaaaataaattattt 19431438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 3950296 - 3950343
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3950296 attttagatgagagagaatgatcgatgaatgattaaaataaattattt 3950343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 11872188 - 11872236
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  11872188 tattttagatgaaagagaatgatgattgaatgattataataaattattt 11872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 44448498 - 44448546
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  44448498 tattttagatgggagagaatgatatatgaatgattaaaataaattattt 44448546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 51748674 - 51748610
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||| |||||||||||||||||||||||| |||||||  || |||||| |||| ||||||||||    
T  51748674 cttggatgccatagttttttggtgccattgatgacatagattcattttaaatgaaagagaatgat 51748610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 49177483 - 49177438
Alignment:
Q  293 ttttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  49177483 ttttagatgagagaaaatgatga-tgaatgattaaaataaattattt 49177438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 4213840 - 4213888
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||| |||  |||| |||||||||||||||||||    
T  4213840 tattttagatgagagagaacgatatatgagtgattaaaataaattattt 4213888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 17368396 - 17368444
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| ||||| |||||| ||||| |||||||||||||||||    
T  17368396 tattttagatgaaagagagtgatgattgaataattaaaataaattattt 17368444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 50175962 - 50176006
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaatt 335  Q
    |||||||||||||||  || |||||||||||||||||||||||||    
T  50175962 tattttagatgagaggaaaagatgaatgaatgattaaaataaatt 50176006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 5398029 - 5398070
Alignment:
Q  298 gatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||| ||||||||||||||||||| ||||||||||| |||||    
T  5398029 gatgggagagaatgatgaatgaattattaaaataaactattt 5398070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 27032295 - 27032332
Alignment:
Q  276 ttggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  27032295 ttggtgacatatgttcattttatatgagagagaatgat 27032332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 27907660 - 27907697
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  27907660 cttggatgccatagttttttggtgccattggtgtcata 27907697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 46325497 - 46325456
Alignment:
Q  298 gatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  46325497 gatgagagggaatgatagatgaatgattaaaataaattattt 46325456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 46325597 - 46325638
Alignment:
Q  298 gatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||  ||||||||||||||||| ||||||    
T  46325597 gatgagagagaatgatagatgaatgattaaaataagttattt 46325638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 15106287 - 15106251
Alignment:
Q  303 gagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||  ||||||||||||||||||||||||    
T  15106287 gagagaatgatagatgaatgattaaaataaattattt 15106251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 17923909 - 17923869
Alignment:
Q  299 atgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||| || |||||| |||||||||||||||||    
T  17923909 atgagagagaatgttggatgaataattaaaataaattattt 17923869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 45781257 - 45781221
Alignment:
Q  303 gagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  45781257 gagataatgatggatgaatgattaaaataaattattt 45781221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 2628394 - 2628484
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  2628394 cttggatgccatagttttttggtgccattggtgacataagttcattttagatgagagagaatgatgaataaatgattaaaataaactattt 2628484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 9488728 - 9488818
Alignment:
Q  250 ttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagag-agaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| ||||||||||  |||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9488728 ttgggtgccataattttttggtgttattgatgacataagttcattttagatgagaggagaatgatgaatgaatgattaaaataaattattt 9488818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 32279261 - 32279342
Alignment:
Q  258 catagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||| ||| ||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  32279261 catagttttttggtgtcatcggtgacataggttcattttagatgagagaaaatgatgaatgaataattaaaataaattattt 32279342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 34328227 - 34328163
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  34328227 cttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 34328163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 46425286 - 46425350
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  46425286 cttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 46425350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 16876685 - 16876749
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||    
T  16876685 cttgggtgccatagttttttggtgccattgatgatataagttcattttagatgaaagagaatgat 16876749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 23185873 - 23185935
Alignment:
Q  250 ttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  23185873 ttgggtgccatagttttttagtgccattggtgacata-gttcattttagatgaaagagaatgat 23185935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 18867896 - 18867960
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||| |||||||||||||| ||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  18867896 cttggatgccatagtttttttgtgtcattggtgacataggttcattttagatgaaagagaatgat 18867960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 33957478 - 33957527
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataaattat 337  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  33957478 gtttattttagatgagaaagaatgatagatgaatgattaaaataaattat 33957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 11369056 - 11369103
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| || || |||||||||||||||||||||    
T  11369056 attttagatgagagagaatgttggataaatgattaaaataaattattt 11369103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 37685191 - 37685238
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  37685191 attttagacgagagagaatgttggatgaatgattaaaataaattattt 37685238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 42971640 - 42971691
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  42971640 gtttattttagatgagagagaatgttgggcgaatgattaaaataaattattt 42971691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 16876850 - 16876813
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  16876850 cttgggtgccatagttttttggtgccattggtgccata 16876813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 23186036 - 23185999
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  23186036 cttgggtgccatagttttttggtgccattggtgccata 23185999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 43368497 - 43368534
Alignment:
Q  302 agagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  43368497 agagagaatgatggatgaatgattaaaataaattattt 43368534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 26825469 - 26825513
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataa 332  Q
    |||||||||| || ||||||||||||| |||||||||||||||||    
T  26825469 gtttattttaaataagagagaatgatggatgaatgattaaaataa 26825513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 339
Target Start/End: Complemental strand, 7352822 - 7352787
Alignment:
Q  304 agagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| |||||||||||||||||||||||||||    
T  7352822 agagaatgttgaatgaatgattaaaataaattattt 7352787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 22815819 - 22815856
Alignment:
Q  301 gagagagaatgatgaatgaatgattaaaataaattatt 338  Q
    |||||||||||||| || ||||||||||||||||||||    
T  22815819 gagagagaatgatggatcaatgattaaaataaattatt 22815856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 22715816 - 22715864
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| ||||| ||||  || |||||||||||||||||||||    
T  22715816 tattttagatgaaagagagtgatagataaatgattaaaataaattattt 22715864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 32204833 - 32204785
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||  |||||  || |||||||||||||||||||||    
T  32204833 tattttagatgagagaagatgatagataaatgattaaaataaattattt 32204785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 34928927 - 34928837
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  34928927 cttgggtgccatagttttttagtgtcattgatgacatatgttcattttagatgagagagaatgataaatgaatgattaaaataaattattt 34928837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 22658956 - 22658870
Alignment:
Q  253 ggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22658956 ggtgccatagttttttggtgcgattggtaacataagttcattttagatgaaagagaatgatgaatgaatgattaaaataaattattt 22658870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 14151900 - 14151990
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||  |||||||||||| || ||||| ||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  14151900 cttgggtatcatagttttttgatgtcattgatgacataggttcattttagatgagagataataatgaatgaatgattaaaataaattattt 14151990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 27554885 - 27554971
Alignment:
Q  253 ggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||  |||||||| ||| ||| ||||||||||||||||||| |||||||||| ||| ||||||||| |||||||    
T  27554885 ggtgccatagttttttactgccattgatgatataagtttattttagatgagagaaaatgatgaataaataattaaaatagattattt 27554971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 2651746 - 2651665
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||          ||||||||||||||||||||||||||||    
T  2651746 cttgggtgccatagttttttggtgccattggtgacataagttcattttagatg---------tatgaatgaatgattaaaataaattattt 2651665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 22473657 - 22473597
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaat 310  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  22473657 cttgggtgccatagttttttggcgccat-ggtgacatatgttcattttagatgagagagaat 22473597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 22029847 - 22029899
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataaattatttg 340  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  22029847 gtttattttagatgagagagaatgttggatgaatgattaaaataaattatttg 22029899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 37480404 - 37480340
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||| ||||||    
T  37480404 cttgggtgctatagttttttggtgtcattggtgacataagttcattttagatgaaagaaaatgat 37480340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 19824677 - 19824627
Alignment:
Q  289 tttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  19824677 tttattttagatgagagagaatgttagatgaatgattaaaataaattattt 19824627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 33953219 - 33953171
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||| || |||||| |||||||||||||||||    
T  33953219 tattttagatgagagagaatggtggatgaataattaaaataaattattt 33953171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 33922862 - 33922905
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaat 334  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  33922862 tattctagatgagagagaatgataaatgaatgattaaaataaat 33922905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 14139481 - 14139407
Alignment:
Q  262 gttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattatt 338  Q
    ||||||| ||| ||||| ||| ||| |||||||||||||||  |||||| || ||| ||||||||||||||||||||    
T  14139481 gtttttttgtgtcattgatgatataggtttattttagatga--gagaataataaataaatgattaaaataaattatt 14139407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 14281809 - 14281858
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatg-attaaaataaattattt 339  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  14281809 tattttagatgagagagaatgatagatgaatgtattaaaataaattattt 14281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 8230778 - 8230826
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| ||||| |||||| | |||||||||||||||||||||    
T  8230778 tattttagatgaaagagagtgatgattaaatgattaaaataaattattt 8230826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 22653570 - 22653523
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||| ||||| ||| |||||||||||||||| |||||||    
T  22653570 attttagatgagaaagaataatggatgaatgattaaaatagattattt 22653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 18267856 - 18267902
Alignment:
Q  293 ttttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| ||||||||||||| || ||| |||||||||||||||||    
T  18267856 ttttagataagagagaatgatggattaataattaaaataaattattt 18267902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 18623597 - 18623634
Alignment:
Q  302 agagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaattattt 18623634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 29805503 - 29805449
Alignment:
Q  291 tattttagatgagagagaatgatgaat----gaatgattaaaataaattatttga 341  Q
    |||||||||||| | ||||||||||||    ||||||||||||||||||||||||    
T  29805503 tattttagatgataaagaatgatgaataaatgaatgattaaaataaattatttga 29805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 3622202 - 3622250
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||| |||||||||  | || |||||||||||||||||||    
T  3622202 tattttagatgagtgagaatgatatacgagtgattaaaataaattattt 3622250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 9956694 - 9956650
Alignment:
Q  295 ttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||  ||||| ||||| |||||||||||||||||||    
T  9956694 ttagatgagagaagatgataaatgagtgattaaaataaattattt 9956650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 10688741 - 10688651
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||| |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10688741 cttgggtgctatagttttttggtatcattgatgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattattt 10688651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 47548969 - 47548879
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  47548969 cttgggtgccatggttttttggtgccattggtaacataggttcattttagatgagagagaatgttgaatggatgattaaaataaattattt 47548879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 50700145 - 50700057
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||| ||| |||||||||| ||||||||||||||||| ||| |||||||||||  ||||||||||||| |||||||||||||||||||||    
T  50700145 cttggatgctatagttttttagtgccattggtgacataagttcattttagatga--gagaatgatgaataaatgattaaaataaattattt 50700057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 4037263 - 4037199
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  4037263 cttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 4037199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 39350751 - 39350815
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||    
T  39350751 cttgggtgccatagttttttggtgccattggtgccataggttcattttagatgaaagagaatgat 39350815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 39994313 - 39994249
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  39994313 cttgggtgccatagttttttggtgtcattggtgacataagttaattttagatgaaagagaatgat 39994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 11233628 - 11233564
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||| ||||||||||| ||| ||||| ||||||| ||||||||||||||| ||||||||||    
T  11233628 cttgggtgtcatagttttttagtgtcattgatgacataagtttattttagatgaaagagaatgat 11233564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 132187 - 132151
Alignment:
Q  297 agatgagagagaatgatgaatgaatgattaaaataaa 333  Q
    |||||||||||||||||||||||||||||||||||||    
T  132187 agatgagagagaatgatgaatgaatgattaaaataaa 132151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 39485471 - 39485518
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||| | || ||||||||||||||||||||||||    
T  39485471 attttagatgagagagaaggttggatgaatgattaaaataaattattt 39485518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 46348393 - 46348440
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  46348393 attttagatgagagagaatgatgaatgaattattaagataaactattt 46348440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 49279609 - 49279547
Alignment:
Q  250 ttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||| || |||||||| |||| ||| ||||||||||| ||||||||||    
T  49279609 ttgggtgccatagttttttgatgtcattggtg-cataagttcattttagatgaaagagaatgat 49279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 4037098 - 4037135
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4037098 cttgggtgccatagttttttggtgccattggtgccata 4037135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 16278863 - 16278815
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  16278863 tattttagataagaaagaatgatggatgaataattaaaataaattattt 16278815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 34305878 - 34305830
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||||    
T  34305878 tattttagatgagagagaatgatagatgagtgattaaaatatattattt 34305830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 34272415 - 34272461
Alignment:
Q  253 ggtgccatagttttttggtgccattggtgacatatgtttattttaga 299  Q
    ||||||||||||||||||||  |||||||||||| ||| ||||||||    
T  34272415 ggtgccatagttttttggtgttattggtgacataggttcattttaga 34272461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 42466959 - 42467005
Alignment:
Q  293 ttttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||| |||| | |||||||||||||||| |||||||||||||||||    
T  42466959 ttttacatgaaaaagaatgatgaatgaataattaaaataaattattt 42467005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 16013508 - 16013556
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||| ||||||||  ||| ||||||||||||| ||||||||||    
T  16013508 tattttagatcagagagaacaatggatgaatgattaaagtaaattattt 16013556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 24581539 - 24581579
Alignment:
Q  298 gatgagagagaatgatgaatgaatgattaaaataaattatt 338  Q
    ||||| |||||||| || |||||||||||||||||||||||    
T  24581539 gatgaaagagaatgttggatgaatgattaaaataaattatt 24581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 39488481 - 39488529
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| |||  || |||||||||||||| |||||||||||||||||    
T  39488481 tattttaggtgaatgaaaatgatgaatgaataattaaaataaattattt 39488529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 9928383 - 9928319
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  9928383 cttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 9928319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 22469818 - 22469757
Alignment:
Q  252 gggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  22469818 gggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 22469757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 457740 - 457692
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  457740 tattttagatgagagagaatgatggatgaatgattaaaataaattattt 457692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 8585834 - 8585745
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||| |||||||||| | || |||| |||||||  || |||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  8585834 cttgggtgacatagttttt-gatgacattagtgacattagtgtattttagatgaaagagaatgatggatgaatgattaaaataaatgattt 8585745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 28963591 - 28963638
Alignment:
Q  292 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  28963591 attttagatgagagagaatgaagaatgaatgattaaaataacttattt 28963638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 5522480 - 5522526
Alignment:
Q  288 gtttattttagatgagagagaatgatgaatgaatgattaaaataaat 334  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  5522480 gtttattttagatgaaagagaatgttgaatgaatgattaaaataaat 5522526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 26847244 - 26847183
Alignment:
Q  278 ggtgacatatgtttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||  || |||||||||||||||||||||||  |||||||| |||||||||||||||    
T  26847244 ggtgacattagtgtattttagatgagagagaatgatagatgaatgagtaaaataaattattt 26847183  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 24226149 - 24226101
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  24226149 tattttagatgagagaaaatgatagatgaatgattaaaataaattattt 24226101  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 167180 - 167230
Alignment:
Q  289 tttattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||| |||| ||| |||| ||||||||||||||||||    
T  167180 tttattttagatgagagataatgttgattgaaagattaaaataaattattt 167230  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 9549472 - 9549409
Alignment:
Q  280 tgacatatgtttattttagatgagagagaatg----atgaatgaatgattaaaataaattattt 339  Q
    ||||||| |||  |||||||||||||||||||    ||||||||||||||||||||||||||||    
T  9549472 tgacataggttcgttttagatgagagagaatggtgaatgaatgaatgattaaaataaattattt 9549409  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 512834 - 512786
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||| ||  |||| |||||||||||||||||||    
T  512834 tattttagatgagagagaataatagatgagtgattaaaataaattattt 512786  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 6793585 - 6793537
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||||||||||||| |||  |||| |||||||||||||||||||    
T  6793585 tattttagatgagagagaacgatagatgagtgattaaaataaattattt 6793537  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 31743980 - 31743916
Alignment:
Q  250 ttgggtgccatagttttttggt-gccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    |||||||||||||||||||  | ||||||||| ||||| ||| ||||||||||| ||||||||||    
T  31743980 ttgggtgccatagtttttttattgccattggtaacataagttcattttagatgaaagagaatgat 31743916  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 22469656 - 22469693
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacata 286  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  22469656 cttgggtgccatagttttttggtgtcattggtgccata 22469693  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 9928219 - 9928255
Alignment:
Q  250 ttgggtgccatagttttttggtgccattggtgacata 286  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  9928219 ttggatgccatagttttttggtgccattggtgccata 9928255  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 28729979 - 28730027
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    |||||||||||||||||||||||  || | || ||||||||||||||||    
T  28729979 tattttagatgagagagaatgatagatcagtgcttaaaataaattattt 28730027  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 32267017 - 32267065
Alignment:
Q  290 ttattttagatgagagagaatgatgaatgaatgattaaaataaattatt 338  Q
    |||||||||||||  |||||||||  || ||||||||||||||||||||    
T  32267017 ttattttagatgaatgagaatgatagattaatgattaaaataaattatt 32267065  T

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Target: scaffold0176 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 15213 - 15149
Alignment:
Q  249 cttgggtgccatagttttttggtgccattggtgacatatgtttattttagatgagagagaatgat 313  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  15213 cttgggtgccataattttttggtgccattggtgacatatgttcattttagatgaaagataatgat 15149  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 31662 - 31614
Alignment:
Q  291 tattttagatgagagagaatgatgaatgaatgattaaaataaattattt 339  Q
    ||||||||| |||||||||| ||  ||||||||||||||||||||||||    
T  31662 tattttagacgagagagaataatagatgaatgattaaaataaattattt 31614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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