View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_7 (Length: 332)
Name: NF9441_low_7
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 41641963 - 41642078
Alignment:
| Q |
15 |
gacacattaaagtaattaatcacatatataatgatttcaattaccttgaatattttttgtcacatgagctgacaatccagaactcaaaggataaagagta |
114 |
Q |
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| T |
41641963 |
gacacatcaaagtaattaatcacatatataatgatttcaattaccttgaatattttttgtcacatgagctgacaatccagaactcaaaggataaagagta |
41642062 |
T |
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| Q |
115 |
tcatcaagatctgcag |
130 |
Q |
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| T |
41642063 |
tcatcaagatctgcag |
41642078 |
T |
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Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 41642156 - 41642234
Alignment:
| Q |
208 |
gtgattttaccaaataaaaggcaatcatatttggcctttgattgctgaaactgatctccattttccattttatactcta |
286 |
Q |
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| T |
41642156 |
gtgattttaccaaataaaaggcaatcatatttggcctttgattgctgaaactgatctccattttccattttatactcta |
41642234 |
T |
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