View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9442_low_1 (Length: 676)
Name: NF9442_low_1
Description: NF9442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9442_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 657
Target Start/End: Complemental strand, 13882022 - 13881389
Alignment:
| Q |
20 |
tcattgccattttctaaacgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882022 |
tcattgccattttctaaacgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattg |
13881923 |
T |
|
| Q |
120 |
gttttctctgtagtttcaa-------gttgtataattagtgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgt |
212 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881922 |
gttttctctgtagtttcaactttcaagttgtataattattgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgt |
13881823 |
T |
|
| Q |
213 |
ctaaattatacccttatataaacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881822 |
ctaaattatacccttatataaacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
13881723 |
T |
|
| Q |
313 |
accattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcat |
412 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
13881722 |
accattcattctttctgacacttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcat |
13881623 |
T |
|
| Q |
413 |
atgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaatatgcttg |
512 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881622 |
atgaaaa-tcaataaaacttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtattga--------- |
13881533 |
T |
|
| Q |
513 |
aatatgcaagnnnnnnnnnnnnnnnnncatttgaagtttgactcttgcctatttaaatatgctcctggagttttaagtagtgttatatgttttgtaacat |
612 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881532 |
-atatgcaagttttcttttccttttttcatttgaagtttgactcttgcctatttaaatatgctcctggagttttaagtagtgttatatgttttgtaacat |
13881434 |
T |
|
| Q |
613 |
ggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
657 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881433 |
ggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
13881389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 253 - 508
Target Start/End: Complemental strand, 16022693 - 16022434
Alignment:
| Q |
253 |
taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgacattggtaccattcattctttctgacacttaatgcgtgtacttcta |
351 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||| | |||||| ||| |
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| T |
16022693 |
taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta |
16022594 |
T |
|
| Q |
352 |
tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag |
451 |
Q |
| |
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||||||||||||| || || || ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| |
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| T |
16022593 |
tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag |
16022494 |
T |
|
| Q |
452 |
tttaccacataaatgcttgtg---ttctacacgattagaacatatatcgtattgaatatg |
508 |
Q |
| |
|
|||| ||| ||||||| ||| |||| || ||| |||||||||||||||||||||||| |
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| T |
16022493 |
tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtattgaatatg |
16022434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 509
Target Start/End: Original strand, 14389488 - 14389688
Alignment:
| Q |
307 |
attggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactat |
406 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || | |||||| |||| ||||||| | || || || || || ||||||||||||||||| |||||||| |
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|
| T |
14389488 |
attggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaactat |
14389585 |
T |
|
| Q |
407 |
atgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaata |
506 |
Q |
| |
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|||||| ||| ||||||| ||| |||| ||||||||| ||||||||||| ||| |||| || ||||||| || ||| |||||||||| |||||||||| |
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| T |
14389586 |
atgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatatactgtattgaata |
14389685 |
T |
|
| Q |
507 |
tgc |
509 |
Q |
| |
|
||| |
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|
| T |
14389686 |
tgc |
14389688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 581 - 657
Target Start/End: Original strand, 14389758 - 14389834
Alignment:
| Q |
581 |
agttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
657 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | ||||| || ||||||||||| || ||||||| |
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| T |
14389758 |
agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattc |
14389834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 590 - 657
Target Start/End: Complemental strand, 16022378 - 16022311
Alignment:
| Q |
590 |
tagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
657 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||| || ||||||||||| |||||||||| |
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| T |
16022378 |
tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattc |
16022311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 622
Target Start/End: Complemental strand, 13856788 - 13856744
Alignment:
| Q |
578 |
tggagttttaagtagtgttatatgttttgtaacatggtttatttc |
622 |
Q |
| |
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|||| ||||||| |||||||||||||| ||||||||||||||||| |
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| T |
13856788 |
tggaattttaaggagtgttatatgtttggtaacatggtttatttc |
13856744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
| Q |
375 |
tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
455 |
Q |
| |
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||||||||||| ||||||||||| ||||||| ||||||| | ||||||| |||||||| |||| |||| ||||||||||| |
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|
| T |
48707228 |
tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 26200174 - 26200118
Alignment:
| Q |
373 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
429 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
26200174 |
actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 505
Target Start/End: Complemental strand, 29623333 - 29623198
Alignment:
| Q |
373 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtg |
472 |
Q |
| |
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||||||||||||||||| || |||| |||||||||||||| |||| |||||| |||| || || ||| | ||||||||||| || |||||| ||| |
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| T |
29623333 |
actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaatctggaagcttttttgatatagtttatcatgaaaatgcccgtg |
29623234 |
T |
|
| Q |
473 |
---ttctacacgattagaacatatatcgtattgaat |
505 |
Q |
| |
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|||| || ||| ||||||||||||||||||||| |
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|
| T |
29623233 |
ttcttcttcatgatgagaacatatatcgtattgaat |
29623198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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