View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9442_low_3 (Length: 311)
Name: NF9442_low_3
Description: NF9442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9442_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 38892676 - 38892391
Alignment:
| Q |
15 |
aaatctaatccattataagctaatatatttatccacacacacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaagtgaaaagt |
114 |
Q |
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| T |
38892676 |
aaatctaatccattataagctaatatatttatccacacacacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaagtgaaaagt |
38892577 |
T |
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| Q |
115 |
gagatttcaaattgttggatttaagtttgagtgattagttctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacatatataca-t |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
38892576 |
gagatttcaaattgttgggattaagtttgagtgattaattctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacatatacacatt |
38892477 |
T |
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| Q |
214 |
aatgttttaaggtttttagcgaagatatgatgtctccatcgcttataatcataggtaattggtttgttgttgctttctgtgctcct |
299 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
38892476 |
aatgttttaaggttttgagcgaagatatgatgtctccatcgcttataatcataggtaattggttcgctgttgctttccgtgctcct |
38892391 |
T |
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