View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9442_low_5 (Length: 307)
Name: NF9442_low_5
Description: NF9442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9442_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 13881658 - 13881389
Alignment:
| Q |
8 |
atgagatggacatcaagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttct |
107 |
Q |
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| T |
13881658 |
atgagatggatattaagcttcttcaactatatgcatatgaaaa-tcaataaaacttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttct |
13881560 |
T |
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| Q |
108 |
acacgattagaacatatatcgtattgaatatgcttgaatatgcaagnnnnnnnnnnnnnnnnncatttgaagtttgactcttgcctatttaaatatgctc |
207 |
Q |
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| T |
13881559 |
acacgattagaacatatatcgtattga----------atatgcaagttttcttttccttttttcatttgaagtttgactcttgcctatttaaatatgctc |
13881470 |
T |
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| Q |
208 |
ctggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
288 |
Q |
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| T |
13881469 |
ctggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
13881389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 16022568 - 16022434
Alignment:
| Q |
8 |
atgagatggacatcaagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtg---t |
104 |
Q |
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| T |
16022568 |
atgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatagtttatcacgaaaatgctcgtgttct |
16022469 |
T |
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| Q |
105 |
tctacacgattagaacatatatcgtattgaatatg |
139 |
Q |
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| T |
16022468 |
tcttcatgatgagaacatatatcgtattgaatatg |
16022434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 14389570 - 14389688
Alignment:
| Q |
22 |
aagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaaca |
121 |
Q |
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||||||| |||||||||||||| ||| ||||||| ||| |||| ||||||||| ||||||||||| ||| |||| || ||||||| || ||| |||||| |
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| T |
14389570 |
aagcttcttcaactatatgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaaca |
14389669 |
T |
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| Q |
122 |
tatatcgtattgaatatgc |
140 |
Q |
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| T |
14389670 |
tatactgtattgaatatgc |
14389688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 14389758 - 14389834
Alignment:
| Q |
212 |
agttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
288 |
Q |
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| T |
14389758 |
agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattc |
14389834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 16022378 - 16022311
Alignment:
| Q |
221 |
tagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattc |
288 |
Q |
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|||||||||||||| |||||||||||||||||| | ||||| || ||||||||||| |||||||||| |
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| T |
16022378 |
tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattc |
16022311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 13856788 - 13856744
Alignment:
| Q |
209 |
tggagttttaagtagtgttatatgttttgtaacatggtttatttc |
253 |
Q |
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| T |
13856788 |
tggaattttaaggagtgttatatgtttggtaacatggtttatttc |
13856744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26200170 - 26200118
Alignment:
| Q |
8 |
atgagatggacatcaagcttcctcaactatatgcatatgaaaaatcaataaaa |
60 |
Q |
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|||||||||| | ||| |||| ||||||||||||||||||| |||||| |||| |
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| T |
26200170 |
atgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 48707244 - 48707308
Alignment:
| Q |
22 |
aagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
86 |
Q |
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| T |
48707244 |
aagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
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