View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9442_low_6 (Length: 251)
Name: NF9442_low_6
Description: NF9442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9442_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6138656 - 6138420
Alignment:
| Q |
1 |
ccctccaagatgttgatgaagatgatgacgacatgttgacgttgtcttgatgagtatgnnnnnnngaaggaagagtgcgtcttctactagaaccttcatc |
100 |
Q |
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| T |
6138656 |
ccctccaagatgttgatgaagatgatgacgacatgttgacgttgtcttgatgagtatgaaaaaaagaaggaagagtgcgtcttctactagaaccttcatc |
6138557 |
T |
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| Q |
101 |
accctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacgacgtgggtcatcatcgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
6138556 |
accctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacgacgttgatcatcatcgttg |
6138457 |
T |
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| Q |
201 |
ctaggaccaccagtggtggtggtgttgttgttaattc |
237 |
Q |
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| T |
6138456 |
ctaggaccaccagtggtggtggtgttgttgttaattc |
6138420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 6145686 - 6145527
Alignment:
| Q |
23 |
tgatgacgacatgttgacgttgtcttgatgagtatgnnnnnnngaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaa |
122 |
Q |
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| T |
6145686 |
tgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaa |
6145587 |
T |
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| Q |
123 |
gtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
182 |
Q |
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| T |
6145586 |
gtttcacctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacga |
6145527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 6126185 - 6126108
Alignment:
| Q |
105 |
tgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
182 |
Q |
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| T |
6126185 |
tgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctatttctctttaacaatgaattagcacga |
6126108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 33802873 - 33802968
Alignment:
| Q |
68 |
aggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctt |
163 |
Q |
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| T |
33802873 |
aggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggcgatctacttctctt |
33802968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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