View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9443_low_1 (Length: 402)
Name: NF9443_low_1
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9443_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 15382298 - 15381911
Alignment:
| Q |
1 |
gatgataagatttcaagacaaatgcctaacatgcatagatggtcacnnnnnnngcgaagacatgggaataaagccatggtgctgtgactgtgtaactttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15382298 |
gatgataagatttcaagacaaatgcctaacatgcatagatggtcactttttttgcgaagacatgggaataaagccatggtgctgtgactgtgtaactttg |
15382199 |
T |
|
| Q |
101 |
caagtgttgt---atgcaaaaataatataccttgtgtcggggattgaggcaaaatgacaagttctctctataagtctaacctttaattaagcttttgtag |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15382198 |
caagtgttgttgtatgcaaaaataatataccttgtgtcggggattgaggcaaaatgacaagttctctctataagtctaacctttaattaagcttttgtag |
15382099 |
T |
|
| Q |
198 |
agaataaattctgtactaaagtaccttttttaagatctgttgctttttnnnnnnnnnnttatactcttctgtttcaaatatgcaaattttaatataatct |
297 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15382098 |
agaataaattctgtaccaaagtaccttttttaagatctgttgcttttt-aaaaaaaaattatactcttctgcttcaaatatgcaaattttaatataatct |
15382000 |
T |
|
| Q |
298 |
tgaaatgtaataaaggcatgttcagctgcataggtagtagttgctacccatcttccatttcattatgaaacatttatttgacaagatgt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
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| T |
15381999 |
tgaaatgtaataaaggcatgttcagctgcataggtagtagttgctacccttcttccaattcattatggaacatttatttgacaagatgt |
15381911 |
T |
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