View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9443_low_14 (Length: 227)
Name: NF9443_low_14
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9443_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 7953822 - 7954029
Alignment:
| Q |
10 |
agtaatacatcctttgatggttagatttgtgctcgttatattgaatattggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggct |
109 |
Q |
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| T |
7953822 |
agtaatagctcctttgctggttagatttcggcttgttatattgaatgttggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggct |
7953921 |
T |
|
| Q |
110 |
agacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953922 |
agacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacact |
7954021 |
T |
|
| Q |
210 |
tacctttg |
217 |
Q |
| |
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|||||||| |
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| T |
7954022 |
tacctttg |
7954029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 7966702 - 7966909
Alignment:
| Q |
10 |
agtaatacatcctttgatggttagatttgtgctcgttatattgaatattggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggct |
109 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966702 |
agtaatagctcctttgctggttagatttcggcttgttatattgaatgttggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggct |
7966801 |
T |
|
| Q |
110 |
agacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966802 |
agacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacact |
7966901 |
T |
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| Q |
210 |
tacctttg |
217 |
Q |
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|||||||| |
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| T |
7966902 |
tacctttg |
7966909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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