View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9443_low_15 (Length: 227)
Name: NF9443_low_15
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9443_low_15 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 3015306 - 3015181
Alignment:
| Q |
102 |
atctgaattataaacgatacctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttga |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015306 |
atctgaattataaatgatacctttaaaatgccttgaaggatatttactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttga |
3015207 |
T |
|
| Q |
202 |
gaatgcaggcctcatcagcagaatct |
227 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
3015206 |
gaacgcaggcctcatcagcagaatct |
3015181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3015380 - 3015305
Alignment:
| Q |
1 |
aaataacacagttgaatttacccccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015380 |
aaataacacagttgaatttacccccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
3015305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 40671533 - 40671634
Alignment:
| Q |
126 |
aaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcaggcctcatcagcagaat |
225 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
40671533 |
aaaatgccttgaaggacatctactcccaaaacaatgggatccttatggttgaagacaaaatttggcttgatcttgagaacgcaggcctcatcagcagaat |
40671632 |
T |
|
| Q |
226 |
ct |
227 |
Q |
| |
|
|| |
|
|
| T |
40671633 |
ct |
40671634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 44629462 - 44629282
Alignment:
| Q |
23 |
cccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacattgcaaccacaatgagagaaaagattatctgaattataaacgat-ac |
121 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| |||| |||||||||||| ||||| ||| | |||| | ||||||||| ||| || || |
|
|
| T |
44629462 |
cccaaggcaagcaatacaatcttatgcagagaaaactgctatcaatacaaacattgcatccacattgaaa--aaagttcgtctgaattaaaaagaattac |
44629365 |
T |
|
| Q |
122 |
ctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaa |
204 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||| |||| || | |||||| |||| |
|
|
| T |
44629364 |
ctttaaaatgccttcaaggatatcaactcccaaaacaattggatccttcttgttgaagacacaatttggtaagatcttcagaa |
44629282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 44607863 - 44607776
Alignment:
| Q |
117 |
gatacctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaa |
204 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||| | |||||| |||||||||||| |||| || |||||||| |||| |
|
|
| T |
44607863 |
gatacctttaaaatgcctttaaggatatcaactcccaaaataatcggatccttcttgttgaagacacaatttggtatgatcttcagaa |
44607776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University