View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9443_low_19 (Length: 214)
Name: NF9443_low_19
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9443_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 7953506 - 7953687
Alignment:
| Q |
19 |
ataattaccaatctttaggagttattctacttgaagtaagtgattttaatatgtgaaataattttatattttatactaattaaatttttctaatcaatat |
118 |
Q |
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| T |
7953506 |
ataattaccaatctttaggagttattctacttgaagtaagtgatttcaatttctgaaataattttatattttatactaattaaatttttctaatcaatat |
7953605 |
T |
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| Q |
119 |
gtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggcaatcaagcaagttgatattgttatctgtgct |
200 |
Q |
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| T |
7953606 |
gtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggcaatcaagcaagttgatattgtgatttgtgct |
7953687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 7966386 - 7966567
Alignment:
| Q |
19 |
ataattaccaatctttaggagttattctacttgaagtaagtgattttaatatgtgaaataattttatattttatactaattaaatttttctaatcaatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966386 |
ataattaccaatctttaggagttattctacttgaagtaagtgatttcaatttctgaaataattttatattttatactaattaaatttttctaatcaatat |
7966485 |
T |
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| Q |
119 |
gtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggcaatcaagcaagttgatattgttatctgtgct |
200 |
Q |
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| T |
7966486 |
gtctttgactctgcagggtgatataaatgatcatgaaactcttgttaaggcaatcaagcaagttgatattgtgatttgtgct |
7966567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 7942370 - 7942409
Alignment:
| Q |
146 |
tgatcatgaaactcttgttaaggcaatcaagcaagttgat |
185 |
Q |
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| T |
7942370 |
tgatcatgaaagtcttgttaaggcaattaagcaagttgat |
7942409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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