View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9443_low_3 (Length: 341)
Name: NF9443_low_3
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9443_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 3015183 - 3014851
Alignment:
| Q |
1 |
tctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3015183 |
tctttcttgttctcatccttattgttgttcatgtgagtaatgttgtccttgtacctattaaattgatcaaatagatgatgcattttatcggagataaata |
3015084 |
T |
|
| Q |
101 |
ttttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015083 |
ttttgacacccaatttatgtgcaagttgccaagcttcaggggtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgc |
3014984 |
T |
|
| Q |
201 |
ac----------tggccttctccacatccttcttatgtataggacctatgtttatagcactaaccggaatatttactcctggagttttcataatcttcag |
290 |
Q |
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| T |
3014983 |
actggcttgcactggccttctccacatccttcttatgtataggacctatgtttatagcacttaccggaatatttactcctggagttttcataatcttcag |
3014884 |
T |
|
| Q |
291 |
taatgcttctaatgagtgaaagttagacgcctg |
323 |
Q |
| |
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| T |
3014883 |
taatgcttccaatgagtgaaagttagacgcctg |
3014851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 315
Target Start/End: Original strand, 40671651 - 40671928
Alignment:
| Q |
38 |
taatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttc |
137 |
Q |
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| T |
40671651 |
taatgttgttcatgtaagtcttaaatcgatcaaatagatgatgcattttatcggagatgaaaattttgacacccaatttgtgtgcaagttgccaagctcc |
40671750 |
T |
|
| Q |
138 |
aggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacct |
237 |
Q |
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||| ||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
40671751 |
aggggtgaccatggcaggaaacgccaacacaacagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgaacaggacct |
40671850 |
T |
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| Q |
238 |
atgtttatagcactaaccggaatatttactcctggagttttcataatcttcagtaatgcttctaatgagtgaaagtta |
315 |
Q |
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| T |
40671851 |
atgtttacagcactaacaggaatattgacttgtggagttttcataatcttgagaattgcttccaatgagtgaaagtta |
40671928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 57 - 280
Target Start/End: Complemental strand, 44607708 - 44607485
Alignment:
| Q |
57 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
156 |
Q |
| |
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||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||| |||||||| | |||||||| |||||| || || | |
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| T |
44607708 |
cttaaattgatcaaatagatgataaataatatcggcaataaaaattttcacacccaatttatctgcaagttccttagcttcagaggtgactttgacatca |
44607609 |
T |
|
| Q |
157 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacctatgtttatagcactaaccg |
256 |
Q |
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||||||||||||| || ||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| | |
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| T |
44607608 |
aacgccaatatagtagaatattctcgtttcttttcaagcattacactggccttcatcacatccttcttatgtacagggcctatgtttatagcaccaacag |
44607509 |
T |
|
| Q |
257 |
gaatatttactcctggagttttca |
280 |
Q |
| |
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||||||| ||| |||||||||||| |
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| T |
44607508 |
gaatattcacttctggagttttca |
44607485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 306
Target Start/End: Complemental strand, 44629214 - 44628965
Alignment:
| Q |
57 |
cttaaattgatcaaatagatgatgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcagga |
156 |
Q |
| |
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||||||||||||||||||||||| || |||||| |||||||| || |||||||||| | |||||| | || ||||||||| |||||| || || | |
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| T |
44629214 |
cttaaattgatcaaatagatgataaatgatatcggctataaaaatcttcacacccaattcctctgcaagatccctagcttcaggggtgactttgacatca |
44629115 |
T |
|
| Q |
157 |
aacgccaatatagcagcatactctggtttcttttcaagcattgcactggccttctccacatccttcttatgtataggacctatgtttatagcactaaccg |
256 |
Q |
| |
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|| |||||||||| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||| | |
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| T |
44629114 |
aatgccaatatagtagcatattctcgtttcttttcaagcatcacactggccttcatcacatccttcttatgtaccgggcctatgtttatagcactaacag |
44629015 |
T |
|
| Q |
257 |
gaatatttactcctggagttttcataatcttcagtaatgcttctaatgag |
306 |
Q |
| |
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||||||| ||| |||||||||||| || || || ||||||||| |||||| |
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| T |
44629014 |
gaatattcacttctggagttttcaaaaactccaataatgcttccaatgag |
44628965 |
T |
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