View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9443_low_5 (Length: 276)

Name: NF9443_low_5
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9443_low_5
NF9443_low_5
[»] chr6 (20 HSPs)
chr6 (39-265)||(5284856-5285083)
chr6 (39-265)||(5260858-5261085)
chr6 (47-263)||(5446158-5446375)
chr6 (50-263)||(5349332-5349552)
chr6 (50-263)||(5424708-5424928)
chr6 (50-263)||(5067900-5068120)
chr6 (47-206)||(5103716-5103876)
chr6 (54-206)||(5095128-5095281)
chr6 (50-263)||(5158250-5158470)
chr6 (50-263)||(5369440-5369660)
chr6 (51-206)||(5074522-5074678)
chr6 (51-202)||(5355443-5355595)
chr6 (54-206)||(5175955-5176108)
chr6 (54-206)||(5277782-5277935)
chr6 (55-206)||(5147705-5147857)
chr6 (51-165)||(5132738-5132856)
chr6 (47-173)||(5342717-5342844)
chr6 (55-164)||(5690960-5691070)
chr6 (54-206)||(5432501-5432654)
chr6 (79-186)||(5396175-5396283)
[»] chr2 (2 HSPs)
chr2 (67-228)||(22585139-22585301)
chr2 (39-77)||(22585309-22585347)
[»] chr5 (1 HSPs)
chr5 (57-155)||(8876953-8877052)
[»] chr7 (1 HSPs)
chr7 (51-203)||(36214642-36214795)
[»] scaffold0294 (1 HSPs)
scaffold0294 (47-177)||(9480-9611)
[»] chr4 (4 HSPs)
chr4 (70-186)||(4134609-4134726)
chr4 (84-184)||(4352399-4352500)
chr4 (84-186)||(4344120-4344223)
chr4 (86-182)||(4321821-4321918)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 5285083 - 5284856
Alignment:
Q  39 gtgttataggactggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgc 137  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5285083 gtgttataggactgtctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagattgcttcaacttgc 5284984  T
Q  138 cgaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagtcatatacctacaaacttctatggagaa 237  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5284983 agaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagtcatatacctacaaacttctatggagaa 5284884  T
Q  238 aatttaatttccattgagttagagaaca 265  Q
    ||||||||||||||||||||||||||||    
T  5284883 aatttaatttccattgagttagagaaca 5284856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 5261085 - 5260858
Alignment:
Q  39 gtgttataggactggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgc 137  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5261085 gtgttataggactgtctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagattgcttcaacttgc 5260986  T
Q  138 cgaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagtcatatacctacaaacttctatggagaa 237  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5260985 tgaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagtcacatacctacaaacttctatggagaa 5260886  T
Q  238 aatttaatttccattgagttagagaaca 265  Q
    |||||| ||||||| |||||||||||||    
T  5260885 aatttagtttccatcgagttagagaaca 5260858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 263
Target Start/End: Original strand, 5446158 - 5446375
Alignment:
Q  47 ggactggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaa 145  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||    
T  5446158 ggactggctttgaaattgcctacaactaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagactcagatttcttcaacttgctgaggtaa 5446257  T
Q  146 aacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagtcatatacctacaaacttctatggagaaaatttaat 245  Q
    |||||||||| ||||||||||||||||| |||||| | | |  |||||| ||||||||||||||  | || ||||||||||||| | ||||||||||| |    
T  5446258 aacttgatggagattttgaatatgtttcgagagatctaacatggctgtcatggaatggattaagcgacatccctacaaacttctttcgagaaaatttagt 5446357  T
Q  246 ttccattgagttagagaa 263  Q
    |||||| |||||||||||    
T  5446358 ttccatcgagttagagaa 5446375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 5349332 - 5349552
Alignment:
Q  50 ctggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaac 148  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||||  | ||||||||||| |||||| ||||||||||||| |  |||||||    
T  5349332 ctggctttgaagttgccaagagctaatgaaaaatgttttagtactaaagcattcaagaagatgaagagactcagattgcttcaacttgctggggtaaaac 5349431  T
Q  149 ttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga------ttaagtcatatacctacaaacttctatggagaaaattt 242  Q
    ||||||| |||||||||||| |||||| | || |||||  ||| || ||||| |||      |||   ||||||||| ||||||| ||| ||||||||||    
T  5349432 ttgatggagattttgaatatctttcaaaaaatctgagatggctttcttggaacggatgttgtttaccacatatacctgcaaacttttatagagaaaattt 5349531  T
Q  243 aatttccattgagttagagaa 263  Q
    | ||||||| |||||||||||    
T  5349532 agtttccatcgagttagagaa 5349552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 5424708 - 5424928
Alignment:
Q  50 ctggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaac 148  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||||  | ||||||| ||| |||||| ||||||||||||| |  |||||||    
T  5424708 ctggctttgaagttgccaagagctaatgaaaaatgttttagtactaaagcattcaagaagatgacgagactcagattgcttcaacttgctggggtaaaac 5424807  T
Q  149 ttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga------ttaagtcatatacctacaaacttctatggagaaaattt 242  Q
    || |||| |||||| ||||| |||| ||| || |||||  |||||| |||||||||      |||   ||||||||||||||||| ||| ||||| ||||    
T  5424808 ttaatggagattttaaatatctttcgagaaatctgagatggctgtcttggaatggatgttctttaccacatatacctacaaacttttatagagaacattt 5424907  T
Q  243 aatttccattgagttagagaa 263  Q
    | ||||||| |||||||||||    
T  5424908 agtttccatcgagttagagaa 5424928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 263
Target Start/End: Complemental strand, 5068120 - 5067900
Alignment:
Q  50 ctggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaac 148  Q
    ||||||||||||||||| | | |||||| ||||||||||||||||||||||||  | ||||||||||| |||||| ||||||||||||| |  ||||| |    
T  5068120 ctggctttgaagttgccaagatctaatgaaaaatgttttagtactaaagcattcaagaagatgaagagactcagattgcttcaacttgctggggtaaacc 5068021  T
Q  149 ttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgga------ttaagtcatatacctacaaacttctatggagaaaattt 242  Q
    ||||||| |||||||||||| |||| ||| || ||| |  |||||| |||||||||      |||   |||||||||  |||||| ||| ||||||||||    
T  5068020 ttgatggagattttgaatatctttcgagaaatctgatatggctgtcttggaatggatgttgtttaccacatatacctgaaaacttttatagagaaaattt 5067921  T
Q  243 aatttccattgagttagagaa 263  Q
    | ||||||| |||||||||||    
T  5067920 agtttccatcgagttagagaa 5067900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 5103876 - 5103716
Alignment:
Q  47 ggactggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaa 145  Q
    |||||||||||||||||||| | | | |||| ||||||||||||||||||||||||  | ||||||||||| || ||| ||||||||||| | | |||||    
T  5103876 ggactggctttgaagttgccaagatccaatgaaaaatgttttagtactaaagcattcaagaagatgaagagacttagactgcttcaactttctggagtaa 5103777  T
Q  146 aacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    |||||||||| |||||||||||| |||| ||| || ||| | ||||||| |||||||||||    
T  5103776 aacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 5103716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 5095128 - 5095281
Alignment:
Q  54 ctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgccgaagtaaaacttga 152  Q
    |||||||||| || | ||| |||| ||||||||||||||||||||||||  | ||||||| ||| ||||||| |||||||||||| |  || ||||||||    
T  5095128 ctttgaagttcccaagagccaatgaaaaatgttttagtactaaagcattcaagaagatgacgagactcagattgcttcaacttgctggggttaaacttga 5095227  T
Q  153 tggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    ||| |||||||||||| |||| ||| || |||||  |||||| |||||||||||    
T  5095228 tggagattttgaatatctttcgagaaatctgagatggctgtcttggaatggatt 5095281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 263
Target Start/End: Complemental strand, 5158470 - 5158250
Alignment:
Q  50 ctggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaac 148  Q
    ||||||||||||||||  | |||||||| ||||||||| ||||||||||||||  | ||||||||||| || ||| ||||||||||||| |  || ||||    
T  5158470 ctggctttgaagttgcaaagagctaatgaaaaatgtttcagtactaaagcattcaagaagatgaagagacttagattgcttcaacttgctggggtcaaac 5158371  T
Q  149 ttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt------aagtcatatacctacaaacttctatggagaaaattt 242  Q
    ||| ||| |||||| ||||| |||| |||  | |||||  |||||| |||||| ||||      ||  ||||||||||||||||| |||  |||||||||    
T  5158370 ttgttggagattttaaatatatttcgagaagtctgagatggctgtcttggaatagattttcttcaacacatatacctacaaacttttatatagaaaattt 5158271  T
Q  243 aatttccattgagttagagaa 263  Q
    | ||||||| |||||||||||    
T  5158270 agtttccatcgagttagagaa 5158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 5369440 - 5369660
Alignment:
Q  50 ctggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgccgaagtaaaac 148  Q
    ||||| ||||||||||| | |||||||| |||| ||||||| |||||||||||  | |||||||| |  ||||||| ||| |||||||| |  |||||||    
T  5369440 ctggcgttgaagttgccaagagctaatgaaaaacgttttagcactaaagcattcaagaagatgaacaaactcagattgctccaacttgctggggtaaaac 5369539  T
Q  149 ttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagt------catatacctacaaacttctatggagaaaattt 242  Q
    ||||||| |||||||||||| |||| ||| || |||||  |||||| |||||||||||  ||      |||||||| ||||| || | | ||||||||||    
T  5369540 ttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcacatataccaacaaatttgtgtagagaaaattt 5369639  T
Q  243 aatttccattgagttagagaa 263  Q
    | ||||||| |||||||||||    
T  5369640 agtttccatcgagttagagaa 5369660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 5074678 - 5074522
Alignment:
Q  51 tggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgccgaagtaaaact 149  Q
    |||||||||||||||| | ||  |||||||||||||||||||||||||||||| | |||||| | |  ||  ||| |||||||||||| |  ||| ||||    
T  5074678 tggctttgaagttgccaagagaaaatgcaaaatgttttagtactaaagcatttaagaagatggaaaaacttcgattgcttcaacttgctggtgtacaact 5074579  T
Q  150 tgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    |||||||||||||||| || |||||||| ||||||||  ||| || |||||||||||    
T  5074578 tgatggggattttgaacatctttcaagaaatttgagatggctttcatggaatggatt 5074522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 5355595 - 5355443
Alignment:
Q  51 tggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaact 149  Q
    |||||||||||||||| | || | ||||||||||||||||||||||||||||| | ||||||||||| || | | |||||| |||||| | |||||||||    
T  5355595 tggctttgaagttgccaagagttgatgcaaaatgttttagtactaaagcatttaagaagatgaagagactgaaattgcttctacttgctggagtaaaact 5355496  T
Q  150 tgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatg 202  Q
    ||||||  ||||||||| | |||||||| || ||||   |||||| |||||||    
T  5355495 tgatggaaattttgaatgtctttcaagaaatctgaggtggctgtcttggaatg 5355443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 5175955 - 5176108
Alignment:
Q  54 ctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctca-gatgcttcaacttgccgaagtaaaacttga 152  Q
    ||||||||||||| | || || ||| ||||||| |||||||||||||||||| || |||||||  |||| | ||||||||||||| |  ||  |||||||    
T  5175955 ctttgaagttgccaagagatagtgcgaaatgttatagtactaaagcatttgagaacatgaagaaactcaggttgcttcaacttgctggtgtgcaacttga 5176054  T
Q  153 tggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    |||||||||||| ||| |||||||| || |||||  ||| || |||||||||||    
T  5176055 tggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatt 5176108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 5277782 - 5277935
Alignment:
Q  54 ctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcag-atgcttcaacttgccgaagtaaaacttga 152  Q
    ||||||||||||| | || || ||| ||||||| |||||||||||||||||| || |||||||  |||||  ||||||||||||| |  ||  |||||||    
T  5277782 ctttgaagttgccaagagatagtgcgaaatgttatagtactaaagcatttgagaacatgaagaaactcagtttgcttcaacttgctggtgtgcaacttga 5277881  T
Q  153 tggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    |||||||||||| ||| |||||||| || |||||  ||| || |||||||||||    
T  5277882 tggggattttgagtatctttcaagaaatctgagatggctttcttggaatggatt 5277935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 5147857 - 5147705
Alignment:
Q  55 tttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgat 153  Q
    |||||||||||| | | ||| | |||||||||||||||||||||||||| | |||||||  || || ||| ||||||||||| | | |||| ||||||||    
T  5147857 tttgaagttgccaatatctagttcaaaatgttttagtactaaagcatttaagaagatgacaagactgagattgcttcaacttactggagtacaacttgat 5147758  T
Q  154 ggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    ||||||||||||||  |||| ||| || |||||  ||| || |||||||||||    
T  5147757 ggggattttgaatacatttcgagaaatctgagatggctttcttggaatggatt 5147705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 5132856 - 5132738
Alignment:
Q  51 tggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcattt---gaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaa 146  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||||   || | || || ||| |||||| ||||||||||||  |  |||||    
T  5132856 tggctttgaagttgccaagagctaatgcaaaatgtcttagtactaaagcatttaaggagatgacgacgaggctcagattgcttcaacttgatggggtaaa 5132757  T
Q  147 acttgatggggattttgaa 165  Q
    ||||||||| |||||||||    
T  5132756 acttgatggagattttgaa 5132738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 5342717 - 5342844
Alignment:
Q  47 ggactggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaa 145  Q
    |||||||||||||||||||  |||| | |||||||  ||||||| ||||||||||||||||||||||| |  || ||| ||||||||||| | |  |||     
T  5342717 ggactggctttgaagttgctaaaaggtgatgcaaatcgttttagaactaaagcatttgaaaagatgaataaactaagattgcttcaactttctggcgtac 5342816  T
Q  146 aacttgatggggattttgaatatgtttc 173  Q
    |||||||||| |||||||| ||| ||||    
T  5342817 aacttgatggagattttgactatctttc 5342844  T

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Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 5691070 - 5690960
Alignment:
Q  55 tttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgat 153  Q
    |||||||||||| | |||||||| | ||||||||| |||| |||||||||| |||||| | |  || ||| || |||||||||| | |||| ||||||||    
T  5691070 tttgaagttgccaagagctaatgtacaatgttttaatactgaagcatttgagaagatggaaaaactgagattgtttcaacttgctggagtagaacttgat 5690971  T
Q  154 ggggattttga 164  Q
    ||| |||||||    
T  5690970 gggaattttga 5690960  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 5432501 - 5432654
Alignment:
Q  54 ctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttga 152  Q
    ||||||||||||| | || || ||||||||||| |||||||   |||||| | ||||||||||  |||||| ||||| ||||||| |  ||  | |||||    
T  5432501 ctttgaagttgccaagagatagtgcaaaatgttatagtactgttgcatttaagaagatgaagaaactcagattgcttgaacttgctggtgtgcagcttga 5432600  T
Q  153 tggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggatt 206  Q
    |||| |||||||| || |||||||| || |||||  ||| || |||||||||||    
T  5432601 tgggaattttgaacatctttcaagaaatctgagatggctttcttggaatggatt 5432654  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 5396175 - 5396283
Alignment:
Q  79 aaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgatggggattttgaatatgtttcaaga 177  Q
    |||||| |||||||| ||||||||  | |||||||| |  |||||| ||||||||||||| |   || |||||||||| |||||||||||| ||||||||    
T  5396175 aaaatgctttagtaccaaagcattcaagaagatgaaaaaactcagactgcttcaacttgctggtttacaacttgatggtgattttgaatatctttcaaga 5396274  T
Q  178 gatttgaga 186  Q
     || |||||    
T  5396275 aatgtgaga 5396283  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 228
Target Start/End: Complemental strand, 22585301 - 22585139
Alignment:
Q  67 taaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgccgaagtaaaacttgatggggattttgaa 165  Q
    ||||||||||| ||| | |||||||||| |  ||||||||||||||||  | ||||||| |||||||||||| |||||||||||||||||||| |||  |    
T  22585301 taaagctaatgaaaacttttttagtactgactcatttgaaaagatgaaaggactcagattgcttcaacttgctgaagtaaaacttgatggggactttaga 22585202  T
Q  166 tatgtttcaagagatttgagactgctgtcgtggaatggattaagtcatatacctacaaacttc 228  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||  |||||||    
T  22585201 tatgtttcaagagagttgagattgctgtcatggaatggattaagtcacatacctgaaaacttc 22585139  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 22585347 - 22585309
Alignment:
Q  39 gtgttataggactggctttgaagttgcctaaagctaatg 77  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  22585347 gtgttatgggactggctttgaagttgcctaaagctaatg 22585309  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 8876953 - 8877052
Alignment:
Q  57 tgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgatgg 155  Q
    |||||||||| | || | |||||||| |||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||  ||| ||||||||||    
T  8876953 tgaagttgccaatagatgatgcaaaacgttttagtactaaagcatttaagaagatgaagagactcagattgcttcaacttgccggcgtacaacttgatgg 8877052  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 36214795 - 36214642
Alignment:
Q  51 tggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcagat-gcttcaacttgccgaagtaaaact 149  Q
    |||||||||| ||||| | | | |||| |||| | |||||||||||||||||| | |||||||| || ||||||| |||||||||||| |  ||| ||||    
T  36214795 tggctttgaaattgccaagaacaaatggaaaacgctttagtactaaagcatttaagaagatgaaaagactcagattgcttcaacttgctggtgtacaact 36214696  T
Q  150 tgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatgg 203  Q
    ||||||||| ||||| ||| |||||| | ||||||||  ||| || ||||||||    
T  36214695 tgatggggactttgagtatctttcaaaaaatttgagatggctttcttggaatgg 36214642  T

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Target: scaffold0294 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 9611 - 9480
Alignment:
Q  47 ggactggctttgaagttgcctaaagctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaa 145  Q
    ||||| |||||||||||||| | | ||| | |||||||||||||| || || ||||||| |||||| |||| || ||| ||||||||||||| | ||||     
T  9611 ggactagctttgaagttgccaataactagttcaaaatgttttagtgctgaatcatttgagaagatggagagactaagattgcttcaacttgctggagtac 9512  T
Q  146 aacttgatggggattttgaatatgtttcaaga 177  Q
    |||||||||| ||||| || ||| ||||||||    
T  9511 aacttgatggagatttcgagtatctttcaaga 9480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 4134726 - 4134609
Alignment:
Q  70 agctaatgcaaaatgttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgatggggattttgaatat 168  Q
    |||||||||||||||||||||||| || |||||||| || |||||||  || ||| ||||||||| | | |  ||| |||||||||| |||||| |||||    
T  4134726 agctaatgcaaaatgttttagtaccaatgcatttgagaacatgaagaaactgagattgcttcaaccttctggtgtacaacttgatggagattttaaatat 4134627  T
Q  169 gtttcaagagatttgaga 186  Q
     |||||||| ||||||||    
T  4134626 ctttcaagaaatttgaga 4134609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 4352399 - 4352500
Alignment:
Q  84 gttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgatggggattttgaatatgtttcaagagattt 182  Q
    |||||||||| ||||||||||| || |||||||  |||||| |||| |||||| | |  ||| |||||||||| |||||| ||||| |||||||| ||||    
T  4352399 gttttagtaccaaagcatttgagaacatgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaattt 4352498  T
Q  183 ga 184  Q
    ||    
T  4352499 ga 4352500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 4344120 - 4344223
Alignment:
Q  84 gttttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgatggggattttgaatatgtttcaagagattt 182  Q
    |||||||||| ||||||||||| || |||||||  || ||| |||| |||||| | |  ||| |||||||||| |||||| ||||| |||||||| ||||    
T  4344120 gttttagtaccaaagcatttgagaacatgaagaaacttagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaattt 4344219  T
Q  183 gaga 186  Q
    ||||    
T  4344220 gaga 4344223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 4321918 - 4321821
Alignment:
Q  86 tttagtactaaagcatttgaaaagatgaagagtctcaga-tgcttcaacttgccgaagtaaaacttgatggggattttgaatatgtttcaagagattt 182  Q
    |||||||||||| ||||||| || |||||||  |||||| |||| |||||| | |  ||| |||||||||| |||||| ||||| |||||||| ||||    
T  4321918 tttagtactaaaacatttgagaacatgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatatttcaagaaattt 4321821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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