View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9443_low_6 (Length: 243)

Name: NF9443_low_6
Description: NF9443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9443_low_6
NF9443_low_6
[»] chr7 (23 HSPs)
chr7 (99-197)||(21788782-21788880)
chr7 (90-197)||(21786055-21786162)
chr7 (124-206)||(21764601-21764686)
chr7 (124-208)||(21746077-21746164)
chr7 (89-196)||(15714163-15714276)
chr7 (132-197)||(21705199-21705264)
chr7 (128-194)||(21807668-21807734)
chr7 (124-206)||(21652732-21652820)
chr7 (123-196)||(21792549-21792622)
chr7 (89-197)||(21714729-21714837)
chr7 (1-64)||(21689859-21689922)
chr7 (1-54)||(21992628-21992681)
chr7 (1-57)||(21628574-21628630)
chr7 (123-197)||(21657010-21657087)
chr7 (131-206)||(21664683-21664758)
chr7 (1-64)||(21682096-21682159)
chr7 (1-63)||(21807802-21807864)
chr7 (1-54)||(21656897-21656950)
chr7 (3-64)||(21785854-21785915)
chr7 (1-45)||(21623639-21623683)
chr7 (1-31)||(15714063-15714093)
chr7 (128-197)||(21690016-21690085)
chr7 (1-64)||(21788675-21788735)
[»] scaffold0182 (1 HSPs)
scaffold0182 (89-151)||(25904-25966)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 21788782 - 21788880
Alignment:
Q  99 gagaatgacgtggttccaaacaaaaaaggagaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctccttgatctt 197  Q
    ||||| ||| ||||||||||   ||| |||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||||    
T  21788782 gagaaggacatggttccaaaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacacccactcatcttcttgatctt 21788880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 21786055 - 21786162
Alignment:
Q  90 tcagagaaagagaatgacgtggttccaaacaaaaaaggagaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctcc 189  Q
    |||||||| ||||| ||| |||||||||| | |||||||||||||||||||||| |||||||   |||||||||||||| ||||||||||  |||||| |    
T  21786055 tcagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttc 21786154  T
Q  190 ttgatctt 197  Q
    ||||||||    
T  21786155 ttgatctt 21786162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 21764601 - 21764686
Alignment:
Q  124 aaggagaaggagaacatagtgtatcaatga---caaatgagtcacagtcagagacacccactcatctccttgatcttatgcataaa 206  Q
    |||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||| || ||||||  |||||||    
T  21764601 aaggagaaggagaacatagtgtatcaataataacaaatgagtcacagtcagagacacccactcatcttctagatcttcagcataaa 21764686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 21746077 - 21746164
Alignment:
Q  124 aaggagaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagac---acccactcatctccttgatcttatgcataaact 208  Q
    |||||| ||||||||||| ||||||||| |||||||||||||| ||||||||   |||||||||||| ||||||||| ||||||||||    
T  21746077 aaggaggaggagaacataatgtatcaataacaaatgagtcacattcagagacaatacccactcatcttcttgatcttctgcataaact 21746164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 15714163 - 15714276
Alignment:
Q  89 gtcagagaaagagaatgacgtggttccaaacaaaaaaggagaaggagaacatagtgtatcaatgaca------aatgagtcacagtcagagacacccact 182  Q
    |||| |||| |||||  ||| ||||||||||| ||||||||||||| || |||||||||||||  ||      |||||||||||||||||||||||||||    
T  15714163 gtcaaagaaggagaagaacggggttccaaacagaaaaggagaaggacaatatagtgtatcaataccattacgaaatgagtcacagtcagagacacccact 15714262  T
Q  183 catctccttgatct 196  Q
    ||||| ||||||||    
T  15714263 catcttcttgatct 15714276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 21705199 - 21705264
Alignment:
Q  132 ggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctccttgatctt 197  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||| ||||| |||||||||    
T  21705199 ggagaacatagtgtatcaataccaaatgagtcacagtcagaaacacccacacatcttcttgatctt 21705264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 21807734 - 21807668
Alignment:
Q  128 agaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctccttgat 194  Q
    ||||| |||||||||||||||||| ||||||||||  |||||||||||||| |||||||| ||||||    
T  21807734 agaagaagaacatagtgtatcaataacaaatgagtggcagtcagagacaccaactcatcttcttgat 21807668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 21652732 - 21652820
Alignment:
Q  124 aaggagaaggagaacatagtgtatcaatgac------aaatgagtcacagtcagagacacccactcatctccttgatcttatgcataaa 206  Q
    ||||||||||||||||||||||||| ||  |      |||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  21652732 aaggagaaggagaacatagtgtatcgataccttaaccaaatgagtcacagtcaaagacacccactcatcttcttgatcttctgcataaa 21652820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 21792549 - 21792622
Alignment:
Q  123 aaaggagaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctccttgatct 196  Q
    |||||||||||| ||||||||||||||||| || ||||||||| || |||| |||||| |||||| ||||||||    
T  21792549 aaaggagaaggacaacatagtgtatcaatgccagatgagtcactgttagagccacccaatcatcttcttgatct 21792622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 21714729 - 21714837
Alignment:
Q  89 gtcagagaaagagaatgacgtggttccaaacaaaaaaggagaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctc 188  Q
    |||||||||  |||| ||| |||||||||| | ||||| |||| |||| |||||| |||||||   |||||||||||||| ||||||||||  ||||||     
T  21714729 gtcagagaagaagaaggacatggttccaaaaagaaaagcagaaagagagcatagtttatcaatacgaaatgagtcacagttagagacaccctttcatctt 21714828  T
Q  189 cttgatctt 197  Q
    |||||||||    
T  21714829 cttgatctt 21714837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21689859 - 21689922
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatgacgaatttcct 64  Q
    ||||| ||||||||||||||||||||||| |   ||||||||||||||||| ||||||||||||    
T  21689859 tactcgagctattgtggaaagataacaacaagagtgaattgataaaaagcacgacgaatttcct 21689922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21992628 - 21992681
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatga 54  Q
    |||||||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  21992628 tactcaagctattgtggaaagataacaatgagagtgaattgataaaaagcatga 21992681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21628574 - 21628630
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatgacga 57  Q
    |||||||||||||||||||||||||||| ||   ||||||||||||| |||||||||    
T  21628574 tactcaagctattgtggaaagataacaatgagaatgaattgataaaatgcatgacga 21628630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 21657010 - 21657087
Alignment:
Q  123 aaaggagaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagac---acccactcatctccttgatctt 197  Q
    |||||||| ||||||||||||| ||||||  || |||||||||| ||||||||   |||||||||||| |||||||||    
T  21657010 aaaggagatggagaacatagtgcatcaatagcagatgagtcacaatcagagacaatacccactcatcttcttgatctt 21657087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 21664683 - 21664758
Alignment:
Q  131 aggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctccttgatcttatgcataaa 206  Q
    ||||||||||| |||||||||   |||||||||||||   ||||||||||||||||| ||||||||| ||| ||||    
T  21664683 aggagaacatattgtatcaatactaaatgagtcacagctggagacacccactcatcttcttgatcttctgcgtaaa 21664758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21682096 - 21682159
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatgacgaatttcct 64  Q
    |||||||||||||||||||||||| ||| ||   ||||||||||||||  ||||||||||||||    
T  21682096 tactcaagctattgtggaaagatagcaatgagagtgaattgataaaaattatgacgaatttcct 21682159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 21807864 - 21807802
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatgacgaatttcc 63  Q
    |||| |||||||||||| |||||||||| || | |||||||||||||| ||||| ||||||||    
T  21807864 tacttaagctattgtgggaagataacaatgagggtgaattgataaaaatcatgaggaatttcc 21807802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21656897 - 21656950
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatga 54  Q
    ||||||||||||||||||||||| ||||| |   ||||||||||||||||||||    
T  21656897 tactcaagctattgtggaaagatgacaacaagagtgaattgataaaaagcatga 21656950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 21785854 - 21785915
Alignment:
Q  3 ctcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatgacgaatttcct 64  Q
    ||||| |||||||||||||||| | ||||   |||||||||||||||||||| |||||||||    
T  21785854 ctcaaactattgtggaaagatagcgacgagagtgaattgataaaaagcatgaagaatttcct 21785915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21623639 - 21623683
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataa 45  Q
    |||||||||||||||||||||||||||||||   |||||||||||    
T  21623639 tactcaagctattgtggaaagataacaacgagaatgaattgataa 21623683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15714063 - 15714093
Alignment:
Q  1 tactcaagctattgtggaaagataacaacga 31  Q
    |||||||||||||||||||||||||||||||    
T  15714063 tactcaagctattgtggaaagataacaacga 15714093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 21690016 - 21690085
Alignment:
Q  128 agaaggagaacatagtgtatcaatgacaaatgagtcacagtcagagacacccactcatctccttgatctt 197  Q
    ||||||| |||| | |||||||||  ||||||| ||||| ||  |||||||||||||||| |||||||||    
T  21690016 agaaggacaacacaatgtatcaataccaaatgaatcacattcgaagacacccactcatcttcttgatctt 21690085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21788675 - 21788735
Alignment:
Q  1 tactcaagctattgtggaaagataacaacgacgctgaattgataaaaagcatgacgaatttcct 64  Q
    ||||||||||||||||||||||||||   ||   |||||||||||||||||||| || ||||||    
T  21788675 tactcaagctattgtggaaagataac---gatagtgaattgataaaaagcatgatgactttcct 21788735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 25904 - 25966
Alignment:
Q  89 gtcagagaaagagaatgacgtggttccaaacaaaaaaggagaaggagaacatagtgtatcaat 151  Q
    ||||||||| ||||| ||| ||| |||||| ||||| |||||||||||| |||||||||||||    
T  25904 gtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaatatagtgtatcaat 25966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University