View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_17 (Length: 329)
Name: NF9444_high_17
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 36845533 - 36845824
Alignment:
| Q |
17 |
tccttgaacataaccacagatgctcccattatcaacccttgcactcatccaaaattcttttacaagctcggtatagataggtttcttttctgcacagaag |
116 |
Q |
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| T |
36845533 |
tccttgaacataaccacagatgctcccattatcaacccttgcactcatccaaaattcttttacaagctcggtgtagataggtttcttttctgcacagaag |
36845632 |
T |
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| Q |
117 |
tattccatccaacccatatcctcaaaattttctccgaagtcaaattcattttcagcaagatcatataggtcaacccttggttccagtagaacttctagtt |
216 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36845633 |
tattccatccaacccatatccacaaaattttctctgaagtcaaattcatttgcagcaagatcatataggtcaacccttggttccagtagaacttctagtt |
36845732 |
T |
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| Q |
217 |
cttcaaattccatattagtagttgtttgtggacttcacacgatactttggaagaaagggtttggcaaagctgtttgttcctttacccgcaaa |
308 |
Q |
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| T |
36845733 |
cttcaaattccatattagtagttgtttgtggacttcacacgatactttggaagaaagggtttggcaaagctgtttgttcctttacccgcaaa |
36845824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 18931225 - 18931443
Alignment:
| Q |
17 |
tccttgaacataaccacagatgctcccattatcaacccttgcactcatccaaaattcttttacaagctcggtatagataggtttcttttctgcacagaag |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
18931225 |
tccttgaacataaccatagatgctcccattatcaacccttgcactcatccaaaattcttttacaagctcggtgtagataggtttcttttctgcatagaaa |
18931324 |
T |
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| Q |
117 |
tattccatccaacccatatcctcaaaattttctccgaagtcaaattcattttcagcaagatcatataggtcaacccttggttccagtagaacttctagtt |
216 |
Q |
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| T |
18931325 |
tattccatccaacccatatttacaaaactcactctgaagtcgaattcatttgcagcaagatcatataaatcaacccttggttccagtagaacttctagtt |
18931424 |
T |
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| Q |
217 |
cttcaaattccatattagt |
235 |
Q |
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|||||| | ||||||||| |
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| T |
18931425 |
cttcaagtctcatattagt |
18931443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 18931499 - 18931539
Alignment:
| Q |
258 |
atactttggaagaaagggtttggcaaagctgtttgttcctt |
298 |
Q |
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||||| |||||||||||||||||||| | |||||||||||| |
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| T |
18931499 |
atactgtggaagaaagggtttggcaacgttgtttgttcctt |
18931539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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