View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_21 (Length: 324)
Name: NF9444_high_21
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 52629739 - 52629444
Alignment:
| Q |
1 |
tattaatagctatgtcaccggcaaaagttaatttgaatcggcgaaatgtcccatcactaatttgcacacttgattgctaatataagttttacaaaaatca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
52629739 |
tattaatagctatgtcaccggcaaaagtaaatttgaatcggcgaaatgtcacatcactaatttgcacacttgattcctaata--agttttacaaaaatca |
52629642 |
T |
|
| Q |
101 |
aagcataactataagtattatatattactattatatnnnnnnnncaaatacaaatatagttgaaatgacaatgtatattagaatgtaaatttaaatgcgt |
200 |
Q |
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|| |||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
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| T |
52629641 |
aaacataactataagtattatatattattat-atataaaaaaaa-aaatacaaatataattgaaatggcaatatatattagaatgtaaatttaaatgcgt |
52629544 |
T |
|
| Q |
201 |
acctttgcaattttaacaccatattgttggtctatattggatttgctcgaaagtaatcttactcgatccattctgcaaaagattggatggttaaatagat |
300 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52629543 |
acctttgcaattc-aacaccatattgttggtttatattggatttgctcgaaagtaatcttactcgatccactctgcaaaagattggatggttaaatagat |
52629445 |
T |
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