View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_high_26 (Length: 298)
Name: NF9444_high_26
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_26 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0287 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 16108 - 15835
Alignment:
| Q |
9 |
gattattcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaatcaaatgaattaagaaggtt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16108 |
gattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcgtttcccaatcaaatgaattaagaaggtt |
16009 |
T |
|
| Q |
109 |
tgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatctcgtcccttaaaa |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
16008 |
tgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaa |
15909 |
T |
|
| Q |
209 |
tctatatcgttgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcggggtccctatgaat |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15908 |
tctatatcattgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcggggtccctatgaat |
15835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 3629977 - 3630250
Alignment:
| Q |
9 |
gattattcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaatcaaatgaattaagaaggtt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3629977 |
gattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcgtttcccaatcaaatgaattaagaaggtt |
3630076 |
T |
|
| Q |
109 |
tgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatctcgtcccttaaaa |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
3630077 |
tgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaa |
3630176 |
T |
|
| Q |
209 |
tctatatcgttgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcggggtccctatgaat |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3630177 |
tctatatcattgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcggggtccctatgaat |
3630250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 3619601 - 3619874
Alignment:
| Q |
9 |
gattattcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaatcaaatgaattaagaaggtt |
108 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
3619601 |
gattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtt |
3619700 |
T |
|
| Q |
109 |
tgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatctcgtcccttaaaa |
208 |
Q |
| |
|
||| |||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||| | ||||||||||| |
|
|
| T |
3619701 |
tgcggttatcatttctactgtggcgattcctaatggtatgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaa |
3619800 |
T |
|
| Q |
209 |
tctatatcgttgtttaagaatctctctggataaaactcgtcgggatctttccatgcctcggggtccctatgaat |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
3619801 |
tctatatcattgtttaagaatctctctggataaaactcatcggggtctttccatgtctcggggtccctatgaat |
3619874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 31039400 - 31039527
Alignment:
| Q |
152 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatctcgtcccttaaaatctatatcgttgtttaagaatctctctggataaaactcgtcgg |
251 |
Q |
| |
|
||||||||||| ||||| | |||||| || |||| |||||||||| |||| || ||||||||||| | || ||||||||||||||||||||| || | |
|
|
| T |
31039400 |
gggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatgaatctctctggataaaactcttctg |
31039499 |
T |
|
| Q |
252 |
gatctttccatgcctcggggtccctatg |
279 |
Q |
| |
|
|||| |||||| | || ||||| ||||| |
|
|
| T |
31039500 |
gatccttccatacttctgggtctctatg |
31039527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 31052890 - 31053017
Alignment:
| Q |
152 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatctcgtcccttaaaatctatatcgttgtttaagaatctctctggataaaactcgtcgg |
251 |
Q |
| |
|
||||||||||| ||||| | |||||| || |||| |||||||||| |||| || ||||||||||| | || ||||||||||||||||||||| || | |
|
|
| T |
31052890 |
gggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatgaatctctctggataaaactcttctg |
31052989 |
T |
|
| Q |
252 |
gatctttccatgcctcggggtccctatg |
279 |
Q |
| |
|
|||| |||||| | || ||||| ||||| |
|
|
| T |
31052990 |
gatccttccatacttctgggtctctatg |
31053017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 31071722 - 31071834
Alignment:
| Q |
152 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatctcgtcccttaaaatctatatcgttgtttaagaatctctctggataaaactcgtcgg |
251 |
Q |
| |
|
||||||| ||| ||||| | |||||||| |||| ||| |||||| |||| || ||||||||||| | || ||||||||||||||||||||| || | |
|
|
| T |
31071722 |
gggcaaactcttcgccccgagccaaatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatgaatctctctggataaaactcttctg |
31071821 |
T |
|
| Q |
252 |
gatctttccatgc |
264 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
31071822 |
gatccttccatgc |
31071834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 9400285 - 9400323
Alignment:
| Q |
223 |
taagaatctctctggataaaactcgtcgggatctttcca |
261 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
9400285 |
taagaatctctctggataaaactcttctggatctttcca |
9400323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University