View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_28 (Length: 285)
Name: NF9444_high_28
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 55878669 - 55878930
Alignment:
| Q |
17 |
gattcattgaaaaccaatttatgttgatgatgcatggaatgtcatagaataaatgaaacaaa---ggcattcattttctaattctgattatcttccattt |
113 |
Q |
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| T |
55878669 |
gattcattgaaaacgaatttatgttgctgatgcatggaatgtcatagaataaatgaaaaaaaaaaggcattcgttttctgattctgatgatcttcccttt |
55878768 |
T |
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| Q |
114 |
gagtactgctatgacttaaggtgattatagtttatagcttgagagatttcttttctttttaatttcaaattaatcatcaagcactgattcttggatatag |
213 |
Q |
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| T |
55878769 |
gagtactgctatgacataaggttataatagtttatagcttgagagatttcttttctttttaatttcaaattaatcatcaagcactaattgttggatatag |
55878868 |
T |
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| Q |
214 |
ttggagatatgttcgatatataattgaagtttgttaagttagttacaagttggatagtatta |
275 |
Q |
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| T |
55878869 |
tatgagatatgttcgatatataattgaagtttgtaaagttagttacaggttggatagtatta |
55878930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 74 - 275
Target Start/End: Complemental strand, 9062627 - 9062426
Alignment:
| Q |
74 |
acaaaggcattcattttctaattctgattatcttccatttgagtactgctatgacttaaggtgattatagtttatagcttgagagatttcttttcttttt |
173 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9062627 |
acaaaggcattcattttctaattctgatgatcttccctttgagtactgctatgacttaaggtgattatagtttatagcttgaaagatttcttttcttttt |
9062528 |
T |
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| Q |
174 |
aatttcaaattaat--catcaagcactgattcttggatatagttggagatatgttcgatatataattgaagtttgttaagttagttacaagttggatagt |
271 |
Q |
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| T |
9062527 |
aatttcaaattaatcacaccaagcactgattgttggatgtagttggagatattttcg--gtataattgaagtttgttaagttagttacaagttggatagt |
9062430 |
T |
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| Q |
272 |
atta |
275 |
Q |
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|||| |
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| T |
9062429 |
atta |
9062426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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