View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_29 (Length: 283)
Name: NF9444_high_29
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 41090917 - 41091167
Alignment:
| Q |
19 |
gttgttgattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattagatg |
118 |
Q |
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| T |
41090917 |
gttgttgattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattagatg |
41091016 |
T |
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| Q |
119 |
tatgctttnnnnnnntttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgttag |
218 |
Q |
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| T |
41091017 |
tatgctttaaaaagttttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgttag |
41091116 |
T |
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| Q |
219 |
nnnnnnnnnctttcttattttaatttaaagataaagatatgtgcttgaagtataat |
274 |
Q |
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| T |
41091117 |
ttttt-----tttcttattttaatttaaagataaagatatgtgcttgaattataat |
41091167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 41079749 - 41079826
Alignment:
| Q |
149 |
tatataaattaaaaccttaaaa-tatcattaagatttaaatat-------ttgttagagtatttttaggatttgttag |
218 |
Q |
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| T |
41079749 |
tatataaattaaatccttaaaggtatcattaagatttaaatttgaatattttgttagagtatttttaggatttgttag |
41079826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 41079650 - 41079680
Alignment:
| Q |
63 |
tgcatccaataaaatcatttttaggaactaa |
93 |
Q |
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| T |
41079650 |
tgcatccaataaaatcatttttaggaactaa |
41079680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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