View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_high_32 (Length: 262)

Name: NF9444_high_32
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_high_32
NF9444_high_32
[»] chr5 (5 HSPs)
chr5 (18-255)||(32386568-32386804)
chr5 (97-250)||(239840-239993)
chr5 (97-250)||(14025020-14025173)
chr5 (106-245)||(30046686-30046825)
chr5 (72-250)||(18934233-18934410)
[»] chr7 (10 HSPs)
chr7 (72-250)||(8035796-8035974)
chr7 (97-250)||(46045992-46046145)
chr7 (74-235)||(5791306-5791467)
chr7 (97-250)||(38110543-38110696)
chr7 (72-250)||(5350079-5350255)
chr7 (77-255)||(45033527-45033705)
chr7 (97-244)||(7431680-7431827)
chr7 (72-245)||(3782445-3782614)
chr7 (146-214)||(2037609-2037677)
chr7 (97-125)||(22938827-22938855)
[»] chr2 (7 HSPs)
chr2 (72-255)||(24126259-24126442)
chr2 (72-250)||(11995577-11995755)
chr2 (97-250)||(42866002-42866155)
chr2 (90-250)||(40614911-40615062)
chr2 (120-239)||(17526725-17526844)
chr2 (72-160)||(17290299-17290386)
chr2 (72-115)||(24125988-24126031)
[»] chr8 (11 HSPs)
chr8 (72-250)||(45093526-45093704)
chr8 (72-250)||(33373283-33373460)
chr8 (90-250)||(42000360-42000520)
chr8 (72-244)||(9216314-9216489)
chr8 (90-250)||(35808287-35808447)
chr8 (72-206)||(31512243-31512378)
chr8 (72-239)||(14342787-14342954)
chr8 (72-189)||(14770149-14770266)
chr8 (72-189)||(14809618-14809735)
chr8 (74-140)||(9469177-9469243)
chr8 (109-250)||(44145884-44146025)
[»] chr4 (8 HSPs)
chr4 (72-250)||(44307609-44307787)
chr4 (97-250)||(1217244-1217397)
chr4 (72-250)||(28945213-28945390)
chr4 (97-250)||(1369519-1369672)
chr4 (72-244)||(36858651-36858824)
chr4 (72-250)||(4228351-4228528)
chr4 (145-250)||(44072965-44073061)
chr4 (114-158)||(24246282-24246326)
[»] chr1 (8 HSPs)
chr1 (72-250)||(16855030-16855208)
chr1 (97-250)||(6294101-6294254)
chr1 (72-244)||(28706083-28706255)
chr1 (74-239)||(5556097-5556262)
chr1 (97-207)||(38168207-38168317)
chr1 (74-250)||(39476145-39476321)
chr1 (102-160)||(11531505-11531563)
chr1 (102-160)||(22065072-22065130)
[»] chr3 (10 HSPs)
chr3 (72-250)||(37503174-37503353)
chr3 (72-250)||(25905896-25906066)
chr3 (106-238)||(3461459-3461591)
chr3 (95-214)||(1182625-1182744)
chr3 (82-239)||(30775560-30775719)
chr3 (72-120)||(43329125-43329173)
chr3 (179-242)||(41420426-41420490)
chr3 (120-184)||(43329060-43329124)
chr3 (72-160)||(46428826-46428913)
chr3 (72-160)||(54812090-54812177)
[»] chr6 (1 HSPs)
chr6 (102-250)||(1222851-1222999)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 32386804 - 32386568
Alignment:
Q  18 ttacaccgcctaaattttctaataagtgaactaattgtttgannnnnnnnnnnnacaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||| |||| ||||||||||||    
T  32386804 ttacaccgcctaaattttctaataagtgaactaattgtttgatttttttggtt-acaaaagagggcaaagtccaaagaaaaaaaaaattaagaaattaaa 32386706  T
Q  118 cggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaatctagaaaattca 217  Q
    ||| ||||||||| ||| |||| || | |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  32386705 cgggcgtttctaggcatacaagtcccggaaatatcatcaaacaaaagactctgaagctcactagggggagtctccagaatatgaaaatctagaaaatcca 32386606  T
Q  218 tcgaaatgctgaaattagcaagccaatcagcacctatg 255  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  32386605 tcgaaatgctgaaattagcaagtcaatcagcacttatg 32386568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 239840 - 239993
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| | | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  239840 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 239939  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  239940 tatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatctgcac 239993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 14025173 - 14025020
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||| | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  14025173 aaagaaaactaagaaattaaacggacgttcttaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 14025074  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  14025073 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 14025020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 245
Target Start/End: Complemental strand, 30046825 - 30046686
Alignment:
Q  106 taagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaat 205  Q
    |||||||||||||||||||| ||||  ||||||||   |||||||||||||||||||| |||||||| |||| |||||||| |||||| |||||||||||    
T  30046825 taagaaattaaacggacgttcctaggtatgcaagctttgaaaatatcatcaaacaaaagactctgaaactcactagggggattctccataatatgaaaat 30046726  T
Q  206 ctagaaaattcatcgaaatgctgaaattagcaagccaatc 245  Q
    ||||||||| |||| ||||| |||||||||| ||||||||    
T  30046725 ctagaaaatccatcaaaatgttgaaattagcgagccaatc 30046686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 18934410 - 18934233
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    |||| |||||||||||| |||   |||||||| ||| |||||||| ||||| || |||| ||||||||||| | |||||||||||||||  |   |  ||    
T  18934410 acaatagagggcaaagtccaagagaaaagaaa-ctacgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcga 18934312  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||| |||||||||| ||||   ||||  | |  |||||  |||||||| ||||||||||||||||| ||||    
T  18934311 agctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcac 18934233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 8035974 - 8035796
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||| |||||||    
T  8035974 acaaaagagggcaaagctcaaagaaaaagaaaactaagaaattaaactgacgtttctaggcatgcaagccccggaaatatcatcaaacaaaagactctga 8035875  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  8035874 agctaactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcac 8035796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 46046145 - 46045992
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  46046145 aaagaaaactaagaaattaaacggacgttcctagacatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 46046046  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  46046045 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 46045992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 5791306 - 5791467
Alignment:
Q  74 aaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaag 173  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||    
T  5791306 aaaagagggcaaagcctaaagagaaagaaaactaagaaattaaacggacgttcttagacatgcaagccccgaaaatatcatcaaacaaaagactctgaag 5791405  T
Q  174 ctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattag 235  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  5791406 ctcactagagggagtctccggaatatgaaaatctagaaaattcatctaaatgctgaaattag 5791467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 38110543 - 38110696
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||   |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  38110543 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaggtggagtctccagaa 38110642  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  38110643 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 38110696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 5350255 - 5350079
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||| ||| |||| || | |||||||||||||||||| |||||||    
T  5350255 acaaaagagggcaaagcccaaagaaaaagaaaactaaggaattaaacggacgttcctaggcatacaagtcctggaaatatcatcaaacaaaagactctga 5350156  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| ||||||||||||| ||||||||  ||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  5350155 agctcactagggggagtctctagaatatg--aatatagaaaatccatcgaaatgctgaaattagcaagccaatctgcac 5350079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 45033527 - 45033705
Alignment:
Q  77 agagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctc 176  Q
    ||||||||||   ||||||||||||||||||| |||||||||||| ||| || | |||| |||| | | |||||||||||||||||| ||||||||  ||    
T  45033527 agagggcaaaaaccaaagaaaaagaaaactaaaaaattaaacggatgttcctgggcatgtaagctccggaaatatcatcaaacaaaagactctgaaattc 45033626  T
Q  177 attagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcacctatg 255  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  45033627 attagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttatg 45033705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 7431680 - 7431827
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    |||||||||||| || ||||| ||||||| ||||||||| |||| | ||||||||||||||| | || |||||||||||||||||| ||| |||||||||    
T  7431680 aaagaaaactaaaaatttaaatggacgttcctagacatgtaagctccgaaaatatcatcaaatacaacactctgaagctcattaggaggattctccagaa 7431779  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaat 244  Q
    ||| |||||||| | ||| ||| |||||| ||||||||||||||||||    
T  7431780 tataaaaatctaaagaatccattgaaatgttgaaattagcaagccaat 7431827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 3782614 - 3782445
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||| |||| ||   |   |||||| |||||||  || |||||||    
T  3782614 acaaaagagggcaaagtttaaagagaaagaaaactaagaaattaaacgaacgtttttaggcatgtaaattctagaaatattatcaaacgtaagactctga 3782515  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatc 245  Q
    || ||||||||     |||||||||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  3782514 agttcattagga----tctccagaatatgaaaatttaaaaaattcatcgaaatgctgaaattagcaagtcaatc 3782445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 2037609 - 2037677
Alignment:
Q  146 aaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaatctagaaaat 214  Q
    |||||||||||||||||  ||||||||| ||||||||| ||||||||| |||||||||||||| |||||    
T  2037609 aaatatcatcaaacaaatgactctgaagttcattagggagagtctccaaaatatgaaaatctaaaaaat 2037677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 22938827 - 22938855
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtt 125  Q
    |||||||||||||||||||||||||||||    
T  22938827 aaagaaaactaagaaattaaacggacgtt 22938855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 72 - 255
Target Start/End: Original strand, 24126259 - 24126442
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| ||| |||| ||||||||||| | |||||||||||||||||| |||||||    
T  24126259 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggaagttcctaggcatgcaagccctggaaatatcatcaaacaaaagactctga 24126358  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcacctatg 255  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  24126359 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatctgcacttatg 24126442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 11995577 - 11995755
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||| ||| |||| ||||||     
T  11995577 acaaaagagggcaaatcccaaagaaaaagaaaactaagaaattaaacggacgttcctagacatgcaagcccttgaaatatcattaaaaaaaagactctgg 11995676  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||    
T  11995677 agctcactagggggagtctccagaatatgaaaatatagaaaatccatcgaaatgctgaaattagcaagacaatctgcac 11995755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 42866155 - 42866002
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| | | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  42866155 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 42866056  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  42866055 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 42866002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 40614911 - 40615062
Alignment:
Q  90 caaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtc 189  Q
    |||||| ||||||||||||||||||||||||||||| |||| |||||||||||   |||||||||||||||||| ||||||||||||| || ||||| ||    
T  40614911 caaagagaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaaggggattc 40615010  T
Q  190 tccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||| ||||||||||||         ||||||||||||||||||||||| |||||| ||||    
T  40615011 tccataatatgaaaatc---------catcgaaatgctgaaattagcaaaccaatctgcac 40615062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 17526844 - 17526725
Alignment:
Q  120 gacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaatctagaaaattcatc 219  Q
    ||||||| |||||||| |||||| ||||| |||| |||| |||| ||||||||| |||| ||| |||| ||||| || || |||||  | | ||| ||||    
T  17526844 gacgtttttagacatgtaagccctgaaaagatcaacaaataaaagactctgaagttcataaggaggaggctccaaaagattaaaattcatagaatccatc 17526745  T
Q  220 gaaatgctgaaattagcaag 239  Q
    |||||||| |||||||||||    
T  17526744 gaaatgctaaaattagcaag 17526725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 17290386 - 17290299
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaaca 160  Q
    |||| |||||||||||| |||   |||||||| ||| |||||||| ||||| ||||||| ||||||||||| | |||||||||||||||    
T  17290386 acaatagagggcaaagtccaagagaaaagaaa-ctacgaaattaaccggacatttctaggcatgcaagccccggaaatatcatcaaaca 17290299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 24125988 - 24126031
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaatta 115  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  24125988 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaatta 24126031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 45093704 - 45093526
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||| |||||||    
T  45093704 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctga 45093605  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  45093604 agctcactagggggagtcttcagaatatgaaaatctagaaaatccatcgaaatgctgaaatttgcaagccaatctgcac 45093526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 33373460 - 33373283
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  ||||| ||| |||||||||||||||||||||||||| |||| ||||||||| | | |||||||||||||||||| |||||||    
T  33373460 acaaaagagggcaaagcccaaaggaaa-gaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctga 33373362  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||    
T  33373361 agctcactaggaggagtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaatccaatctgcac 33373283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 42000520 - 42000360
Alignment:
Q  90 caaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtc 189  Q
    |||||||||||||||||||||||||||||| || || |||  ||||||||||| | |||||||||||||||||| ||| ||||||||| ||||| |||||    
T  42000520 caaagaaaaagaaaactaagaaattaaacgaacattcctatgcatgcaagccccggaaatatcatcaaacaaaagactttgaagctcactagggagagtc 42000421  T
Q  190 tccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  42000420 tccagaatatgaaaatctagaaattccatcgaaatgctgaaattagcaagccaatctgcac 42000360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 9216489 - 9216314
Alignment:
Q  72 acaaaagagggcaaa--gttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactct 169  Q
    |||||||||||||||  ||| ||||| |||||||||||| |||||||||||||||| |||  |||| ||| || |||||||||| ||||||||| |||||    
T  9216489 acaaaagagggcaaaaagtttaaagagaaagaaaactaataaattaaacggacgttcctatgcatgtaagtcccgaaaatatcaacaaacaaaaaactct 9216390  T
Q  170 gaagctcattagggggagtctcc-agaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaat 244  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||| ||||||||    
T  9216389 gaagctcactagggggagtctccaagaatatgaaaatctaaaaaatccatcgaagtgctgaaattaggaagccaat 9216314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 35808447 - 35808287
Alignment:
Q  90 caaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtc 189  Q
    |||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| | |||||| ||||||||||| ||||||||||||| |||||||| ||    
T  35808447 caaagagaaagaaaactaagaaattaaaaggacgttcctaggcatgcaagccccggaaatataatcaaacaaaagactctgaagctcactagggggattc 35808348  T
Q  190 tccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||| |||||||| ||||||| ||| |||||||||| || |||||||||||||||| ||||    
T  35808347 tccataatatgaagatctagagaatccatcgaaatgttgtaattagcaagccaatctgcac 35808287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 31512243 - 31512378
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaag-cccggaaaatatcatcaaacaaaatactctg 170  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||  ||||||| |||| ||||||||||||||||||| | ||||    
T  31512243 acaaaagagggcaaagttcaaagaaaaagaaaattaagaaattaaacggacgttcttaggtatgcaagccccgaaaaatatcatcaaacaaaagattctg 31512342  T
Q  171 aagctcattagggggagtctccagaatatgaaaatc 206  Q
    ||||||| |||||||||||| |||||||||||||||    
T  31512343 aagctcactagggggagtcttcagaatatgaaaatc 31512378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 14342787 - 14342954
Alignment:
Q  72 acaaaagagggcaaagttcaaaga-aaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctg 170  Q
    ||||||||||||| ||| |||||| |||| ||||  | |||||||||  ||||||  |||||||||||| || |||||||||||||||||||  ||||||    
T  14342787 acaaaagagggcatagtccaaagagaaaataaaagaacgaaattaaagagacgttcttagacatgcaagtcccgaaaatatcatcaaacaaag-actctg 14342885  T
Q  171 aagctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaag 239  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  14342886 aagctcattagggagagtcttcagaatatgaaaatctagaaaattcattgaaatgttgaaattaccaag 14342954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 14770266 - 14770149
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaa-gaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctg 170  Q
    ||||||||  |||||||| ||||||||| ||||||||| |||||||||  |||||||||| |||| ||| |  |||||| ||||||||||||| ||| ||    
T  14770266 acaaaagatagcaaagttgaaagaaaaaagaaaactaacaaattaaacatacgtttctag-catgtaagacacgaaaatgtcatcaaacaaaagactttg 14770168  T
Q  171 aagctcattagggggagtc 189  Q
    ||||||||| |||||||||    
T  14770167 aagctcatttgggggagtc 14770149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 14809735 - 14809618
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    |||||||| ||||||||  ||||| |||||||||||| |||||||||  |||||||||||||| ||||     ||||| ||||||||||||| ||| |||    
T  14809735 acaaaagatggcaaagtcgaaagagaaagaaaactaacaaattaaactaacgtttctagacattcaagattcaaaaatgtcatcaaacaaaagactttga 14809636  T
Q  172 agctcattagggggagtc 189  Q
    | || |||||||||||||    
T  14809635 atcttattagggggagtc 14809618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 9469243 - 9469177
Alignment:
Q  74 aaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagc 140  Q
    |||||||||||||  ||| |||||||  ||| |||||||||||||| || ||||||| |||||||||    
T  9469243 aaaagagggcaaaactcagagaaaaaccaaattaagaaattaaacgaacatttctaggcatgcaagc 9469177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 44146025 - 44145884
Alignment:
Q  109 gaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaatcta 208  Q
    |||||||| ||||| ||| ||| ||||||||||| |||||||||||||| ||  |   |  |||||||| |||| |||||||||| ||||   ||||  |    
T  44146025 gaaattaaccggacatttttaggcatgcaagccccgaaaatatcatcaaccatgagctttcgaagctcaataggaggagtctccaaaataatcaaattca 44145926  T
Q  209 gaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
     |  |||||  |||||||| ||||||||||| ||||||||||    
T  44145925 aatgattcacagaaatgctaaaattagcaagtcaatcagcac 44145884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 44307787 - 44307609
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||||| |||| ||||||||||| || ||||||||||| ||||| |||||||    
T  44307787 acaaaagagggcaaagcacaaagaaaaagaaaactaagaaattaaacgaacgttcctaggcatgcaagccccgataatatcatcaaccaaaagactctga 44307688  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  44307687 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcac 44307609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 1217397 - 1217244
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  1217397 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 1217298  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||| ||||    
T  1217297 tatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 1217244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 28945213 - 28945390
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||   |||| ||| |||||||||||||||||||||||||| |||| |||| ||| || |||||||||||||||||||| ||| |||    
T  28945213 acaaaagagggcaaagcctaaaggaaa-gaaaactaagaaattaaacggacgttcctaggcatgtaagtcccgaaaatatcatcaaacaaaagactttga 28945311  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||| |||||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||    
T  28945312 agctcactaggaggagtctctagaatatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 28945390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 1369672 - 1369519
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||  | | |||||||||||||||||| ||||||||||||| |||| |||||||| ||||    
T  1369672 aaagaaaactaagaaattaaatggacgttcctaggcatgcaagttccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcaagaa 1369573  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  1369572 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 1369519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 36858651 - 36858824
Alignment:
Q  72 acaaaagagggc-aaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctg 170  Q
    |||||||||||| ||||  |||||| ||||||||||||||||||||| ||||||| |||  |||||||| || | |||||||||||||||||| ||||||    
T  36858651 acaaaagagggccaaaggccaaagagaaagaaaactaagaaattaaaaggacgttcctacgcatgcaagtcccggaaatatcatcaaacaaaagactctg 36858750  T
Q  171 aagctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaat 244  Q
    ||||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||||    
T  36858751 aagctcactagggggattctccagaatatgaagatctagagaatccatcgaaatgctgtaattagtaagtcaat 36858824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 4228528 - 4228351
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    |||| ||||||||||| |||||  |||||||| ||| |||||||| ||||  ||  ||| ||||||||||| | |||||||||||||||  |   |  ||    
T  4228528 acaatagagggcaaagctcaaaagaaaagaaa-ctacgaaattaaccggatattcttaggcatgcaagccccggaaatatcatcaaacatgagctttcga 4228430  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||| |||||||||| ||||   ||||  | | ||||||  |||||||| ||||||||||||||||| ||||    
T  4228429 agctcaataggaggagtctccaaaataatcaaattcaaataattcacagaaatgctaaaattagcaagccaatcggcac 4228351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 44072965 - 44073061
Alignment:
Q  145 aaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaat 244  Q
    |||||| ||| |||||||| ||||||||| ||||||||  ||||||| | |||||||||||||         ||||||||| ||||||||||||||||||    
T  44072965 aaaatagcattaaacaaaagactctgaagttcattaggaagagtctctaaaatatgaaaatct---------atcgaaatgttgaaattagcaagccaat 44073055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 24246282 - 24246326
Alignment:
Q  114 taaacggacgtttctagacatgcaagcccggaaaatatcatcaaa 158  Q
    |||||| || || |||||||||||||||| |||||||||||||||    
T  24246282 taaacgaacattcctagacatgcaagccccgaaaatatcatcaaa 24246326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 16855208 - 16855030
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||| |||||||    
T  16855208 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttccttgacatgcaagccccgaaaatattatcaaacaaaagactctga 16855109  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  16855108 agctcactagggggagtcttcagaatatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatctgcac 16855030  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 6294254 - 6294101
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  6294254 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 6294155  T
Q  197 tatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  6294154 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcac 6294101  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 28706255 - 28706083
Alignment:
Q  72 acaaaagaggg-caaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctg 170  Q
    ||||||||||| |||||| |||||| | |||||||||| |||||||||||||||| |||| |||||| |||| |||| ||||||||||||||| ||| ||    
T  28706255 acaaaagagggtcaaagtccaaagagatagaaaactaaaaaattaaacggacgttcctaggcatgcaggccccgaaa-tatcatcaaacaaaagactatg 28706157  T
Q  171 aagctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaat 244  Q
    ||||| | |||||| | |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  28706156 aagcttactaggggtattctccaaaatatgaaaatctaaaaaatccatcgaaatgctgaaattagcaagccaat 28706083  T

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Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 5556262 - 5556097
Alignment:
Q  74 aaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaag 173  Q
    ||||||||||||| |  ||||| |||| ||| |||||||||||| || |||||||| ||||||||||||   |||||||||||||||||| | || ||||    
T  5556262 aaaagagggcaaaatctaaagagaaaggaaattaagaaattaaatgggcgtttctacacatgcaagccctagaaatatcatcaaacaaaagaatcagaag 5556163  T
Q  174 ctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaag 239  Q
    |||||||| ||||||||| |||||||||||||||| |||||  |||||||||||||||||||||||    
T  5556162 ctcattagagggagtctctagaatatgaaaatctaaaaaatctatcgaaatgctgaaattagcaag 5556097  T

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Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 38168207 - 38168317
Alignment:
Q  97 aaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaa 196  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  38168207 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 38168306  T
Q  197 tatgaaaatct 207  Q
    |||||||||||    
T  38168307 tatgaaaatct 38168317  T

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Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 39476321 - 39476145
Alignment:
Q  74 aaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaag 173  Q
    ||||||||| ||| | |||| | |||||||| |||||||||||||||||||| |||| ||||||||      ||||||| |||||||||| | | |||||    
T  39476321 aaaagaggggaaaatccaaaaagaaagaaaagtaagaaattaaacggacgttcctaggcatgcaagtttcagaaatatcgtcaaacaaaagattttgaag 39476222  T
Q  174 ctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
     ||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  39476221 ttcactagggggagtcttcaggatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagacaatctgcac 39476145  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 11531563 - 11531505
Alignment:
Q  102 aaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaaca 160  Q
    |||||| |||||||| ||||| ||  ||||||||||||| | |||||||||||||||||    
T  11531563 aaactacgaaattaatcggacattcttagacatgcaagctccgaaaatatcatcaaaca 11531505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 22065072 - 22065130
Alignment:
Q  102 aaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaaca 160  Q
    |||||| |||||||| ||||| || |||| ||||||||||| | |||||||||||||||    
T  22065072 aaactacgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaaca 22065130  T

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Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 37503353 - 37503174
Alignment:
Q  72 acaaaagagggc-aaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctg 170  Q
    |||||||||||| ||||  |||||| |||||||||||| | ||||||||||||||||||||||||||||  | ||||||||||||||||| |  ||||||    
T  37503353 acaaaagagggccaaagcccaaagagaaagaaaactaaaagattaaacggacgtttctagacatgcaagttccgaaaatatcatcaaacacaggactctg 37503254  T
Q  171 aagctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    ||||||| |||||||| |||| |||||||||||||||||| ||| |||||||||||| ||||||||||| ||||| ||||    
T  37503253 aagctcactagggggattctctagaatatgaaaatctagagaatccatcgaaatgctaaaattagcaagtcaatctgcac 37503174  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 25906066 - 25905896
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctga 171  Q
    ||||||||||||||||  |||||||||||||||||||||        ||||||| |||| ||||||| ||| | |||||||||||||||||| |||||||    
T  25906066 acaaaagagggcaaagcccaaagaaaaagaaaactaaga--------ggacgttcctaggcatgcaaaccccggaaatatcatcaaacaaaagactctga 25905975  T
Q  172 agctcattagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    |||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||| ||||| ||||    
T  25905974 agctcactagggggagtctcaagaatatgtaaatctagaaaatccattgaaatgctgaaattagcaagtcaatctgcac 25905896  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 3461459 - 3461591
Alignment:
Q  106 taagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatgaaaat 205  Q
    ||||||||||||||  |||| |||| ||||||||||   ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  3461459 taagaaattaaacgctcgttcctaggcatgcaagcctcaaaaatatcatcaaacaaaagactctgaagttcattagggggattctccagaatatgaaaat 3461558  T
Q  206 ctagaaaattcatcgaaatgctgaaattagcaa 238  Q
    |||||||||  || || ||||| ||||||||||    
T  3461559 ctagaaaatctattgatatgctcaaattagcaa 3461591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 1182744 - 1182625
Alignment:
Q  95 aaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccag 194  Q
    ||||| |||| |||||||||||| |||||||  ||| |||||||||||  |||||||||||||||||||||||| |||||||| ||| |||||||||||     
T  1182744 aaaaaaaaaagtaagaaattaaatggacgttcttaggcatgcaagccccaaaaatatcatcaaacaaaatactcagaagctcactagagggagtctccaa 1182645  T
Q  195 aatatgaaaatctagaaaat 214  Q
    |||||||| ||||| |||||    
T  1182644 aatatgaatatctataaaat 1182625  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 30775560 - 30775719
Alignment:
Q  82 gcaaagttcaaaga-aaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccgga-aaatatcatcaaacaaaatactctgaagctcatt 179  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||| |||||||| ||||| |  | ||||| | |||||||||| ||| ||||| ||| |    
T  30775560 gcaaagctcaaagagaaaagaaaactaagaaattaaacggatgttcctagacatacaagctcctagaaataccgtcaaacaaaagactttgaagttcact 30775659  T
Q  180 agggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctgaaattagcaag 239  Q
    | | ||||||| ||  ||||||||||||| ||||| |||| ||||||| |||||||||||    
T  30775660 aagaggagtctacatgatatgaaaatctaaaaaatccatcaaaatgcttaaattagcaag 30775719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 43329173 - 43329125
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacgg 120  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  43329173 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacgg 43329125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 41420426 - 41420490
Alignment:
Q  179 tagggggagtctccagaatatgaaaatctagaaaattcatcgaaatgctg-aaattagcaagcca 242  Q
    ||||||||||||| | |||| || ||||||||||||||||||||||| || ||||||||||||||    
T  41420426 tagggggagtctcaaaaatacgagaatctagaaaattcatcgaaatgatgaaaattagcaagcca 41420490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 43329060 - 43329124
Alignment:
Q  120 gacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggg 184  Q
    |||||| |||| ||||||||| |  ||||||||||||||||||| ||||||||||||| ||||||    
T  43329060 gacgttcctaggcatgcaagctccaaaaatatcatcaaacaaaagactctgaagctcactagggg 43329124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 46428913 - 46428826
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaaca 160  Q
    ||||||||||||||||  |||   |||||||| ||| |||||||||||||| || |||| ||||||||||  | |||||||||||||||    
T  46428913 acaaaagagggcaaagcccaagagaaaagaaa-ctacgaaattaaacggacattcctaggcatgcaagcctcggaaatatcatcaaaca 46428826  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 54812090 - 54812177
Alignment:
Q  72 acaaaagagggcaaagttcaaagaaaaagaaaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaaca 160  Q
    |||| |||||||||||  ||||  |||||||| ||  |||||||| ||||| || |||| ||||||||||||| |||||||||||||||    
T  54812090 acaatagagggcaaagcccaaaagaaaagaaa-ctgcgaaattaaccggacattcctaggcatgcaagcccgggaaatatcatcaaaca 54812177  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 1222851 - 1222999
Alignment:
Q  102 aaactaagaaattaaacggacgtttctagacatgcaagcccggaaaatatcatcaaacaaaatactctgaagctcattagggggagtctccagaatatga 201  Q
    |||||| |||||||| ||||| || |||| ||||||||||| | |||||||||||||||  |   |  |||||||| |||| |||||||||| ||||       
T  1222851 aaactacgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatc 1222950  T
Q  202 aaatctagaaaattcatcgaaatgctgaaattagcaagccaatcagcac 250  Q
    ||||  | |  |||||  |||||||| ||||||||||||||||| ||||    
T  1222951 aaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcac 1222999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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