View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_33 (Length: 258)
Name: NF9444_high_33
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2988871 - 2988618
Alignment:
| Q |
1 |
acgggtctgagtacatatgatcattaggtattttaaaataaacaattataagtttcaatagcaaacgagcaccacagttccatatcgaaattggatatta |
100 |
Q |
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| T |
2988871 |
acgggtctgagtacatatgatcactaggtatttcaaaataaacaattataagtttcaatagcaaacaagcaccacagttccatatcgaaattggatatta |
2988772 |
T |
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| Q |
101 |
ggatgataaaatgaaattaaaaa---------catatttttcctaagagcaaacagtatcacaacttcatgttggcaatagttatctgca----aaagat |
187 |
Q |
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| T |
2988771 |
ggatgataaaaagaaattaaaaaaaaaaaaagcatatttttcctaagggctaacagtatcacaacttcatgttggcaatagttatctccaagtgaaagat |
2988672 |
T |
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| Q |
188 |
attcgcctcctagtttgaaatcctcacttttgcttaatg-ttgctccatttgat |
240 |
Q |
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| T |
2988671 |
atccacctcctcgtttgaaatcctcgcttttgcttaatgtttgctccatttgat |
2988618 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 18780100 - 18780045
Alignment:
| Q |
119 |
aaaaacatatttttcctaagagcaaacagtatcacaacttcatgttggcaatagtt |
174 |
Q |
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| T |
18780100 |
aaaaacgtatttctcctaggagcaaacaatatcacaacttcatgttgacaaaagtt |
18780045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 38263374 - 38263282
Alignment:
| Q |
31 |
ttttaaaataaacaattataagtttcaatagcaaacgagcaccacagttccatatcgaaattggatattaggatgataaaatgaaattaaaaa |
123 |
Q |
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| T |
38263374 |
ttttaaaataaaacattataagtttcggtagaaaacatgcattacagttccaaatcaaagttgaaaattatgatgataaaatgaaataaaaaa |
38263282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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