View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_39 (Length: 251)
Name: NF9444_high_39
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 102227 - 102005
Alignment:
| Q |
14 |
cacagactgaaaaatgatcagacaataacaaacaaggtactattaaatctcctttctccttcctctttacaggcatatttctgagtcggtcacaaatact |
113 |
Q |
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| T |
102227 |
cacagactgaaaaatgatcagacaataacaaacaaggtactattaaatctcctttctccttcctctttacaggcatatttctgagtcactcacaaatact |
102128 |
T |
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| Q |
114 |
tcctggattaggcattggctgctctcccgtgtaaacgtagagttttgctgtcaggaactcctttgcaggtgaggatctatgcacgattacctgtctgtgt |
213 |
Q |
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| T |
102127 |
tcctggattaggcattggctgctctcccgtgtaaacgtagagttttgctgtcaggaactcctttgcaggtgaggatctatgcacgattacctgtctgtgt |
102028 |
T |
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| Q |
214 |
tgtgagttacaatcccaaatcgt |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
102027 |
tgtgagttacaatcccaaatcgt |
102005 |
T |
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