View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_high_43 (Length: 244)

Name: NF9444_high_43
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_high_43
NF9444_high_43
[»] chr6 (11 HSPs)
chr6 (10-216)||(785249-785455)
chr6 (151-238)||(1334687-1334774)
chr6 (149-244)||(26402624-26402719)
chr6 (145-229)||(32225330-32225414)
chr6 (145-220)||(26178527-26178602)
chr6 (203-244)||(6751880-6751921)
chr6 (145-244)||(19369837-19369924)
chr6 (143-194)||(34197186-34197237)
chr6 (203-244)||(426512-426553)
chr6 (205-238)||(785455-785488)
chr6 (172-244)||(34595154-34595226)
[»] chr2 (7 HSPs)
chr2 (143-244)||(43585943-43586044)
chr2 (143-195)||(14450705-14450757)
chr2 (203-244)||(5040754-5040795)
chr2 (203-244)||(18255978-18256019)
chr2 (203-244)||(37558997-37559038)
chr2 (150-194)||(8300180-8300224)
chr2 (149-193)||(13501036-13501080)
[»] chr7 (9 HSPs)
chr7 (145-244)||(25956465-25956563)
chr7 (157-244)||(1885593-1885675)
chr7 (145-244)||(5937361-5937460)
chr7 (206-244)||(17257990-17258028)
chr7 (206-244)||(37820100-37820138)
chr7 (205-243)||(43243098-43243136)
chr7 (148-194)||(48963995-48964041)
chr7 (205-241)||(6028648-6028684)
chr7 (148-180)||(10702456-10702488)
[»] scaffold0314 (1 HSPs)
scaffold0314 (149-244)||(8968-9061)
[»] chr3 (3 HSPs)
chr3 (146-243)||(34834869-34834965)
chr3 (203-244)||(10954972-10955013)
chr3 (203-244)||(55401095-55401136)
[»] chr4 (12 HSPs)
chr4 (148-194)||(39619045-39619091)
chr4 (148-244)||(13307897-13307993)
chr4 (157-244)||(44362686-44362773)
chr4 (143-193)||(37496786-37496836)
chr4 (145-194)||(5998886-5998935)
chr4 (207-244)||(11797630-11797667)
chr4 (156-194)||(21152895-21152933)
chr4 (203-244)||(13117449-13117490)
chr4 (207-244)||(37496724-37496761)
chr4 (207-244)||(47492399-47492436)
chr4 (143-179)||(4790785-4790821)
chr4 (145-213)||(10635053-10635121)
[»] scaffold0122 (1 HSPs)
scaffold0122 (145-199)||(10247-10301)
[»] chr1 (9 HSPs)
chr1 (148-194)||(18950996-18951041)
chr1 (204-237)||(7888122-7888155)
chr1 (203-244)||(22515885-22515926)
chr1 (203-244)||(22881614-22881655)
chr1 (203-244)||(31667445-31667486)
chr1 (203-244)||(38078659-38078700)
chr1 (203-244)||(41877468-41877509)
chr1 (203-244)||(50195463-50195504)
chr1 (176-244)||(42359420-42359488)
[»] chr5 (5 HSPs)
chr5 (146-186)||(9031879-9031919)
chr5 (148-215)||(21319877-21319944)
chr5 (145-238)||(7621170-7621268)
chr5 (203-244)||(8420047-8420088)
chr5 (203-244)||(33178045-33178086)
[»] scaffold0504 (1 HSPs)
scaffold0504 (143-194)||(8640-8691)
[»] chr8 (6 HSPs)
chr8 (205-244)||(10002163-10002202)
chr8 (206-244)||(4298887-4298925)
chr8 (206-244)||(24295138-24295176)
chr8 (203-244)||(20873089-20873130)
chr8 (211-244)||(26915246-26915279)
chr8 (212-244)||(10497823-10497855)
[»] scaffold0652 (1 HSPs)
scaffold0652 (172-244)||(429-501)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 785249 - 785455
Alignment:
Q  10 gacatcaacatcaaatttatttctccacaacgcaaacagttgcagttaaaactatgtgtatgtttagcatcatgattatttacctaaactaagttgaacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785249 gacatcaacatcaaatttatttctccacaacgcaaacagttgcagttaaaactatgtgtatgtttagcatcatgattatttacctaaactaagttgaacc 785348  T
Q  110 agtgtaattttgtaaaagttacactatgtaaccacctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgaca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  785349 agtgtaattttgtaaaagttacactatgtaaccacctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatgttcgaca 785448  T
Q  210 ccgacac 216  Q
    |||||||    
T  785449 ccgacac 785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 1334774 - 1334687
Alignment:
Q  151 tgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgt 238  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| | | ||||||||||| ||||||||||||| ||||||||    
T  1334774 tgcacggacacttctgattgaaggtgtgtcctggtgttcgacacgcatcgtgttcgacaccgacatttgtgattacattgaattatgt 1334687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 26402624 - 26402719
Alignment:
Q  149 gttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||||||||||  |||||  ||||||| |||   ||| | ||||||||||||||||||||||||| | |||||||| |||||    
T  26402624 gttgcacggacacttctgattgaagaagtgtctcggtgtccaacatgtatcgtgtccgacaccgacacttgtgattacactgaattatgtcatttt 26402719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 32225330 - 32225414
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacatt 229  Q
    ||||| |||||  ||||| |||||||||||||||||| |||||||||||    || | |||||||||||||| ||||||||||||    
T  32225330 ctctgctgcacaaacactcctgattgaaggtgtgtccaggtgtccgacaggggtcgtgtccgacaccgacacctgtgattacatt 32225414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 26178602 - 26178527
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgt 220  Q
    ||||| ||||||||||||||||||||||||| ||||| | ||||||||||   || | ||||||||||| ||||||    
T  26178602 ctctgatgcacggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtccgacaccgatacttgt 26178527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 6751880 - 6751921
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  6751880 tccgacaccgacacttgtgattacattgaattatgtcatttt 6751921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 19369924 - 19369837
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||||||||||||||| |||||  |||||| |||||           |||||||||||||||||||||||| |||||||| |||||    
T  19369924 ctctgttgcacggacacttctgattgaaggcgtgtctcggtgtc-gacac-----------gacaccgacacttgtgattacattgaattatgtcatttt 19369837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 34197237 - 34197186
Alignment:
Q  143 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    |||||| |||||| |||||||||  |||||||||||||||||| ||||||||    
T  34197237 acctctattgcactgacacttctagttgaaggtgtgtcctggtctccgacac 34197186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 426512 - 426553
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||||| |||||||| |||||    
T  426512 tccgacaccgacacttgtaattacatttaattatgtgatttt 426553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 785455 - 785488
Alignment:
Q  205 cgacaccgacacttgtgattacattaaattatgt 238  Q
    ||||||||||||||||||||||||| ||||||||    
T  785455 cgacaccgacacttgtgattacattgaattatgt 785488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 34595226 - 34595154
Alignment:
Q  172 aggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||| |||||| |||||   || | |||||||||||||||||| |||||| | |||||||| |||||    
T  34595226 aggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 34595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 43585943 - 43586044
Alignment:
Q  143 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatt 242  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||| |||||  ||| | ||||||||||||||||||||||||||| |||||||| |||    
T  43585943 acctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatt 43586042  T
Q  243 tt 244  Q
    ||    
T  43586043 tt 43586044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 14450705 - 14450757
Alignment:
Q  143 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacaca 195  Q
    |||||||||||||||||||||||||||||||  |||||| |||||| ||||||    
T  14450705 acctctgttgcacggacacttctgattgaagacgtgtcccggtgtctgacaca 14450757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 5040795 - 5040754
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||||| |||||||| |||||    
T  5040795 tccgacaccgacacttgtaattacattgaattatgtgatttt 5040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 18255978 - 18256019
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||| | ||||||||||||||||| |||||    
T  18255978 tccgacaccgacacttctaattacattaaattatgtgatttt 18256019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 37559038 - 37558997
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||||| |||||||| |||||    
T  37559038 tccgacaccgacacttgtaattacattgaattatgtgatttt 37558997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 8300180 - 8300224
Alignment:
Q  150 ttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    ||||| ||||||||||||||||||| |||||| ||||||| ||||    
T  8300180 ttgcatggacacttctgattgaaggcgtgtcccggtgtccaacac 8300224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 13501036 - 13501080
Alignment:
Q  149 gttgcacggacacttctgattgaaggtgtgtcctggtgtccgaca 193  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||    
T  13501036 gttgcaccgacacttctgattgaaggtgtgtcttgacgtccgaca 13501080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 25956563 - 25956465
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||| ||||||||||||||||||||||||| |||||| | |||||||||   ||| | ||||||||||||||||||||||||||| |||||||| |||||    
T  25956563 ctctattgcacggacacttctgattgaaggcgtgtcccg-tgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgtcatttt 25956465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 1885675 - 1885593
Alignment:
Q  157 gacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||| ||||||||||||||||||||| || ||    ||||||||||||||||||||||||| |||||||| |||||    
T  1885675 gacacttctgattgaacgtgtgtcctggtgtccgacac-caaca----cgacaccgacacttgtgattacattgaattatgtcatttt 1885593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 5937361 - 5937460
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||| |||||||||||||||  |||||||| || | |||||||||||||   ||| |  ||||||| |||||||||||||||||| |||||||| |||||    
T  5937361 ctctattgcacggacacttcatattgaaggcgtattctggtgtccgacatgtatcgtgaccgacacagacacttgtgattacattgaattatgtcatttt 5937460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 17257990 - 17258028
Alignment:
Q  206 gacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  17257990 gacaccgacacttatgattacattgaattatgttatttt 17258028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 37820138 - 37820100
Alignment:
Q  206 gacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  37820138 gacactgacacttgcgattacattaaattatgttatttt 37820100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 43243136 - 43243098
Alignment:
Q  205 cgacaccgacacttgtgattacattaaattatgttattt 243  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  43243136 cgacatcgacacttgtaattacattaaattatgttattt 43243098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 48963995 - 48964041
Alignment:
Q  148 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    ||||||| |||||||||||||||||||| ||||| ||||| ||||||    
T  48963995 tgttgcatggacacttctgattgaaggtatgtcccggtgttcgacac 48964041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 6028684 - 6028648
Alignment:
Q  205 cgacaccgacacttgtgattacattaaattatgttat 241  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  6028684 cgacaccgacatttgtaattacattaaattatgttat 6028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 10702456 - 10702488
Alignment:
Q  148 tgttgcacggacacttctgattgaaggtgtgtc 180  Q
    |||||||| ||||||||||||||||||||||||    
T  10702456 tgttgcaccgacacttctgattgaaggtgtgtc 10702488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 9061 - 8968
Alignment:
Q  149 gttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||||  | ||  ||||||||||||||||||||| || |||||||| |||||    
T  9061 gttgcacagacacttctgattgaaggcgtgtcccggtgtccgacacacacgacat--gacaccgacacttgtgattacgttgaattatgtcatttt 8968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 34834869 - 34834965
Alignment:
Q  146 tctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttattt 243  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||   ||||  ||||||||||| ||| ||||||| ||| |||||||| ||||    
T  34834869 tctgttgcacggacacttctgattgaaggcgtgtcccggtgtccgacatgtatcaagtccgacaccgatactcgtgatta-attgaattatgtcattt 34834965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 10955013 - 10954972
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||||||||||||| | |||||||| |||||    
T  10955013 tccgacaccgacacttgtgattacactgaattatgtgatttt 10954972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 55401136 - 55401095
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  55401136 tccgacaccgacacttgtaattacactaaattatgtgatttt 55401095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 39619045 - 39619091
Alignment:
Q  148 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  39619045 tgttgcacggacacttctgattgaaggtgtgtcccggtgtccgacac 39619091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 13307993 - 13307897
Alignment:
Q  148 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||  |||||||||||||||||  |||| ||||||| |||||   || | ||||||||| ||||||||||||||||| |||||||| |||||    
T  13307993 tgttgcaccaacacttctgattgaaggcatgtcatggtgtctgacacgtgtcgtgtccgacaccaacacttgtgattacattgaattatgtcatttt 13307897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 44362773 - 44362686
Alignment:
Q  157 gacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||| ||||||||||| | ||||||| ||   || | || |||||| |||||||||||||||||||||||||| |||||    
T  44362773 gacacttctgatttaaggtgtgtcccgatgtccgatacgtgtcgtgtctgacaccaacacttgtgattacattaaattatgtcatttt 44362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 37496836 - 37496786
Alignment:
Q  143 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgaca 193  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  37496836 acctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgaca 37496786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 5998935 - 5998886
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  5998935 ctctgttgcaccgacacttatgattgaaggtgtgtccaggtgtccgacac 5998886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 11797630 - 11797667
Alignment:
Q  207 acaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||||||||||||||||| |||||    
T  11797630 acaccgacacttgtgattacattaaattatgtcatttt 11797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 21152895 - 21152933
Alignment:
Q  156 ggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  21152895 ggacacttctgattgaaggagtgtcctgatgtccgacac 21152933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 13117490 - 13117449
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||||||||||||||| |||| ||| |||||    
T  13117490 tccgacaccgacacttgtgattacattgaattttgtcatttt 13117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 37496761 - 37496724
Alignment:
Q  207 acaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  37496761 acaccgacacttgtgattacattgaattatgtcatttt 37496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 47492436 - 47492399
Alignment:
Q  207 acaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  47492436 acactgacacttgtgattacattaaattatgtcatttt 47492399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 4790821 - 4790785
Alignment:
Q  143 acctctgttgcacggacacttctgattgaaggtgtgt 179  Q
    |||||||| |||| |||||||||||||||||||||||    
T  4790821 acctctgtagcaccgacacttctgattgaaggtgtgt 4790785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 10635121 - 10635053
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccga 213  Q
    |||||||||||| || |||||||||||||   ||||| ||||||||||||  ||||| || ||||||||    
T  10635121 ctctgttgcacgaactcttctgattgaagagttgtccgggtgtccgacacgtatcatgtctgacaccga 10635053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 10247 - 10301
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatc 199  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  10247 ctctcttgcacagacacttctgattgaaggtgtgtcctgctgtccgacacgcatc 10301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 18951041 - 18950996
Alignment:
Q  148 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  18951041 tgttgcacg-acacttctgattgaaggtgtgtcctggtgtccgacac 18950996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 7888155 - 7888122
Alignment:
Q  204 ccgacaccgacacttgtgattacattaaattatg 237  Q
    ||||||||||||||||||||||||||||||||||    
T  7888155 ccgacaccgacacttgtgattacattaaattatg 7888122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 22515885 - 22515926
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  22515885 tccgacaccgacacttgtaattacactaaattatgtgatttt 22515926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 22881614 - 22881655
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  22881614 tccgacaccgacacttgtaattacactaaattatgtgatttt 22881655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 31667486 - 31667445
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||| |||||||||||| |||||||| |||||    
T  31667486 tccgacaccgacacatgtgattacatttaattatgtcatttt 31667445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 38078659 - 38078700
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||||| |||||||| |||||    
T  38078659 tccgacaccgacacttgtaattacattgaattatgtgatttt 38078700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 41877468 - 41877509
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  41877468 tccgacaccgacacttgtaattacactaaattatgtaatttt 41877509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 50195463 - 50195504
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||| |||||||||||| |||||||| |||||    
T  50195463 tccgacaccgacacatgtgattacattcaattatgtcatttt 50195504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 42359420 - 42359488
Alignment:
Q  176 gtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||| |||||| ||||||| || | |||||||||||||||||| |||||| | |||| ||| |||||    
T  42359420 gtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaattttgtgatttt 42359488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 9031879 - 9031919
Alignment:
Q  146 tctgttgcacggacacttctgattgaaggtgtgtcctggtg 186  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  9031879 tctgttgcacggacacttctgattgaaggcgtgtcctggtg 9031919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 21319877 - 21319944
Alignment:
Q  148 tgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccgacaccgaca 215  Q
    ||||||||| |||||||||||||||||| | ||||||||| ||| | ||||| | |||||||||||||    
T  21319877 tgttgcacgaacacttctgattgaaggtctatcctggtgttcgatatacatcgtgtccgacaccgaca 21319944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 7621170 - 7621268
Alignment:
Q  145 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacacacatcatatccga-----caccgacacttgtgattacattaaattatgt 238  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||| |   ||| | || ||     |||||| ||||||||||||||||||||||||    
T  7621170 ctctgttgcacggacacttctgattgaagacgtgtcctgatgtccgataagtatcgtgtctgatatgacaccgatacttgtgattacattaaattatgt 7621268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 8420088 - 8420047
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  8420088 tccgacaccgacacttgtaattacattgaattatgttatttt 8420047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 33178086 - 33178045
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  33178086 tccgacaccgacacttgtaattacactaaattatgtgatttt 33178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 8640 - 8691
Alignment:
Q  143 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 194  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||| |||||    
T  8640 acctctgttgcacggacacttctgattgaaggcatgtcccggtgtctgacac 8691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 10002163 - 10002202
Alignment:
Q  205 cgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  10002163 cgacaccgacacatgtgattacattaaattatgtcatttt 10002202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 4298887 - 4298925
Alignment:
Q  206 gacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  4298887 gacaccgacacttgtaattacattaaattatgtgatttt 4298925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 24295138 - 24295176
Alignment:
Q  206 gacaccgacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcatttt 24295176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 20873130 - 20873089
Alignment:
Q  203 tccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||| |||||| |||||||||| |||||    
T  20873130 tccgacaccgacacttgtaattacactaaattatgtgatttt 20873089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 26915246 - 26915279
Alignment:
Q  211 cgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||||||||||||||||||||| |||||    
T  26915246 cgacacttgtgattacattaaattatgtcatttt 26915279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 10497823 - 10497855
Alignment:
Q  212 gacacttgtgattacattaaattatgttatttt 244  Q
    ||||||||||||||||| |||||||||||||||    
T  10497823 gacacttgtgattacatcaaattatgttatttt 10497855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 429 - 501
Alignment:
Q  172 aggtgtgtcctggtgtccgacacacatcatatccgacaccgacacttgtgattacattaaattatgttatttt 244  Q
    |||||||||| |||||| ||||| | || | |||||||||||||||||| |||||| | |||| ||| |||||    
T  429 aggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgatttt 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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