View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_high_46 (Length: 231)
Name: NF9444_high_46
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 45385819 - 45385630
Alignment:
| Q |
17 |
cacagatgttcagtgatgagaacccaaatgcttgcagtgtcatgtgaagttataattttgagaaatatcaagggtttgtatttaaatttattatttaagg |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45385819 |
cacaaatgttcagtgatgagaacccaaatgcttgctgtgtcatgtgaagttataattttcagaaatatcaagggtttgtatttaaatttattatttaagg |
45385720 |
T |
|
| Q |
117 |
ctaaaataagttaga-ttagtcactttcgagtattttcgaatgctagctagctaggaatatacttataacaactctcccaaaaaatgatgttgatagt |
213 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45385719 |
ctaaaataagttagatttagtcactttgtagtattttcgaat--------gctaggaatatacttataacaactctcccaaaaaatgatgttgatagt |
45385630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 45389865 - 45389790
Alignment:
| Q |
17 |
cacagatgttcagtgatgagaacccaaatgcttgcagtgtcatgtgaagttataattttgagaaatatcaagggtt |
92 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||| |||| |
|
|
| T |
45389865 |
cacaaatgttcagtgatgagaacccaaatgcttgcagcgtcatgtgaaattgcaaatttgagaaacatcaaaggtt |
45389790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 21269793 - 21269839
Alignment:
| Q |
17 |
cacagatgttcagtgatgagaacccaaatgcttgcagtgtcatgtga |
63 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
21269793 |
cacaaatgtttagtgatgagaatccaaatgcttgcattgtcatgtga |
21269839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University