View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_5 (Length: 590)
Name: NF9444_high_5
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 7 - 572
Target Start/End: Original strand, 49230435 - 49231002
Alignment:
| Q |
7 |
aatgagatggacatcacatcttaacccgaattcttaggacattagatgtataagtcctcttacttaaataatttactcaacactcaaatttctaatcaaa |
106 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49230435 |
aatgagttgaacatcacatcttaacccgaattcttaggacattagatgtataaatccttttacttaaataatttactcaacactcaaatttctaatcaaa |
49230534 |
T |
|
| Q |
107 |
atgagatttctaactcatattctattgtatcttctacttaagatttcaacacaaaatatccaagataaatagcaacacaggttaattctgttgttgccta |
206 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49230535 |
ataagatttctaactcatattctattgtatcttctacttaaaatttcaacacaaaatatccaagataaatagcaacacaagttaattctgttgttgccta |
49230634 |
T |
|
| Q |
207 |
tgcatcaatgcatggtagttgtgggatttgagtggtctacatggttacatcaaagtccaactatctaaatttcaatatacagattttaaatattttaaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
49230635 |
cgcatcaatgcatggtagttgtgggatttgagttgtctacatggttacatcaaagtccaactatcgaaatttcaatatacagattttaaataatttaaaa |
49230734 |
T |
|
| Q |
307 |
tataatatgatcgactatgtgcatttcactacagctcacgatcataaatgttcacaaattgtgatttttatattggaagnnnnnnntaatggattgcgat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49230735 |
tataatatgatcgactatgtgcatttcactacagctcacgatcataaatgttcacaaattgtgatttttatattggaagaaaaaaaaaatggattgcgat |
49230834 |
T |
|
| Q |
407 |
cttgtttgcattgaccaatcaactttcccatttgtgcagctcactaatgcaaagcctgaagcatgcacc--agagatgtgttttctttttaattcattat |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49230835 |
cttgtttgcattgaccaatcaactttcccatttgtgcagctcactaatgcaaagcctgaagcatgcaccagagagatgtgttttctttttaattcattat |
49230934 |
T |
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| Q |
505 |
ttatattgtgtctggattannnnnnnnattgatcaaaattatctcctggtgatttaaatgatgggaat |
572 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49230935 |
ttatattgtgtctggattattttttttattgatcaaaattatctcctggtgatttaaatgatgggaat |
49231002 |
T |
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