View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_high_6 (Length: 499)
Name: NF9444_high_6
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 31189396 - 31188924
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
31189396 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagacgagattgcaaggag |
31189297 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189296 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
31189197 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189196 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttt |
31189097 |
T |
|
| Q |
319 |
taatcagagttggtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttat |
418 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189096 |
taatcaaagttgataacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagaaattaggttcaagtgtatgtctcgaatagtttttat |
31188997 |
T |
|
| Q |
419 |
acttatgcaaagtcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcctatgct |
491 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31188996 |
acttatgcaaagtcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgct |
31188924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 31201203 - 31200731
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||||||||| |||| || ||||| |
|
|
| T |
31201203 |
agatatactttcctcactgggtatacaataggcttgagcttggtagtaatttgagacctgatggagttatggatacagaagaagacaagattgcaaggag |
31201104 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201103 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
31201004 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201003 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttt |
31200904 |
T |
|
| Q |
319 |
taatcagagttggtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200903 |
taatcagagttggtaacctcttcaaatgaagacactctccacccttttaatcattttgtgaagcaattaggttcaagtgtatgtctcgaatagtttttat |
31200804 |
T |
|
| Q |
419 |
acttatgcaaagtcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcctatgct |
491 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31200803 |
acttatgcaaagtcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgct |
31200731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 31145338 - 31145073
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
31145338 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagattgcaaggag |
31145239 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
31145238 |
aatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagttattgaaatgttagaagttaacatgaattcactt |
31145139 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttctaagtcttaa |
284 |
Q |
| |
|
||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145138 |
gaaataccacccaaaccgttgctttcttctcctactaggtcaatatcagagtcttctaagtcttaa |
31145073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 31171651 - 31171395
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
31171651 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagattgcaaggag |
31171552 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
31171551 |
aatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttacaatgaattcactg |
31171452 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttct |
275 |
Q |
| |
|
||||| ||||| ||||||| | ||| || || ||||| ||| |||||||||||||| |
|
|
| T |
31171451 |
gaaatgccaccaaaaccattacattcatctcccactagatcagtatcagagtcttct |
31171395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 30961248 - 30961551
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||| | | || |||||||||||||||| | |||||||||||| ||||||| || | ||| |
|
|
| T |
30961248 |
agatatactttcctcattgggtatacaataggcttgaacttggtagtgatttgagacctgatggggtaactgatacagaagaaaatgagattgcaaagag |
30961347 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| | || || ||||||||||||||||| ||||||||||||||||||||||||||| | | |
|
|
| T |
30961348 |
aatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcaggcctacaatgagtaaagtagttgaaatgttagaagttaacatgaattcattg |
30961447 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttt |
318 |
Q |
| |
|
||||||||||| ||||||| ||||| || |||||||| ||| |||||||||||| | ||||||| |||||| |||| ||| |||||||||||| ||| |
|
|
| T |
30961448 |
gaaataccaccaaaaccattgctttcgtctcctactagatcattatcagagtcttgcacgtcttaa-atttgacggtatgtaaaattgttatatactttt |
30961546 |
T |
|
| Q |
319 |
taatc |
323 |
Q |
| |
|
||||| |
|
|
| T |
30961547 |
taatc |
30961551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 30992730 - 30993038
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||| | | || |||||||||||||||| |||||||| |||||||||||||| || | ||| |
|
|
| T |
30992730 |
agatatactttcctcattgggtatacaataggcttgaacttggtagttatttgagacctgatggggtaatggatacggaagaagatgagattgcaaagag |
30992829 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
||||| |||||| |||| ||||| |||||||||||||| | || |||||||||||||||||||| ||||||||||||||||| |||| |||| | |
|
|
| T |
30992830 |
gatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcagacctacaatgagtaaagtagttgaaatgttagaagttgacattaattcgttg |
30992929 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttt |
318 |
Q |
| |
|
||||||||||| ||||||| ||||| || |||||||| ||| |||||||||||| | |||||| ||||||| || ||||||||||| |||| ||| |
|
|
| T |
30992930 |
gaaataccaccaaaaccattgctttcgtctcctactagatcagtatcagagtcttgcacttcttaa-atttgagaatatgtataattgttgtatactttt |
30993028 |
T |
|
| Q |
319 |
taatcagagt |
328 |
Q |
| |
|
| |||||||| |
|
|
| T |
30993029 |
ttatcagagt |
30993038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 31224753 - 31225039
Alignment:
| Q |
19 |
agatatactttccacattgggtatacaataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggag |
118 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| ||||||| | | || | ||||||||||| | |||||||||||||||||| |||| || ||||| |
|
|
| T |
31224753 |
agatatattttcctcattgggtatacaaaaggcttgagcttgctagtgattttagacctgatggaataatggatacagaagaagataagattgcaaggag |
31224852 |
T |
|
| Q |
119 |
aatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttactt |
218 |
Q |
| |
|
|||||| ||||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||||||||||||||||||||||| |||| |||||||| | |
|
|
| T |
31224853 |
aatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgataggcctacaatgagtaaagtgattgaaatgttagatgttagcatgaattcgttg |
31224952 |
T |
|
| Q |
219 |
gaaataccacctaaaccatatctttcttcacctactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataatt |
305 |
Q |
| |
|
||||| ||||| ||||||| |||||||| || ||||| || ||||||||||||| | ||| ||| || |||||||| || ||||| |
|
|
| T |
31224953 |
gaaatgccaccaaaaccattgctttcttctccgactagatctgtatcagagtcttccacgtcctaaaatctgagggtatgtgtaatt |
31225039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 31230110 - 31230270
Alignment:
| Q |
96 |
gaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt |
195 |
Q |
| |
|
||||||||||| || || |||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
31230110 |
gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt |
31230209 |
T |
|
| Q |
196 |
tagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
256 |
Q |
| |
|
|||||| |||| ||||| | ||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
31230210 |
tagaaggcaacaagaattgtttggaaataccaccaaaacctattctttcttctcctactag |
31230270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 30955599 - 30955737
Alignment:
| Q |
118 |
gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact |
217 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | || |
|
|
| T |
30955599 |
gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtcct |
30955698 |
T |
|
| Q |
218 |
tgaaataccacctaaaccatatctttcttcacctactag |
256 |
Q |
| |
|
|||||||||||| ||||| | ||||||| |||||||| |
|
|
| T |
30955699 |
tgaaataccaccaaaacctttggtttcttctcctactag |
30955737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 30945339 - 30945456
Alignment:
| Q |
118 |
gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact |
217 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | || |
|
|
| T |
30945339 |
gaatgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatatcct |
30945438 |
T |
|
| Q |
218 |
tgaaataccacctaaacc |
235 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
30945439 |
tgaaataccaccaaaacc |
30945456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 398
Target Start/End: Complemental strand, 31145043 - 31144935
Alignment:
| Q |
290 |
gagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattagg |
389 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| | ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| || |
|
|
| T |
31145043 |
gagggtaagtataattgttatatatattttaaacagagtggataaccacttcaaatgataacaatctccacccttttaatcatcttgtgaagctattggg |
31144944 |
T |
|
| Q |
390 |
ttcaagtgt |
398 |
Q |
| |
|
|| |||||| |
|
|
| T |
31144943 |
tttaagtgt |
31144935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 31214564 - 31214663
Alignment:
| Q |
102 |
gatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaag |
201 |
Q |
| |
|
||||| ||||| | ||||||||| || || || |||||||||||||||||| |||||| |||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
31214564 |
gatgacatcgcaaagagaatgaccatagtaggattatggtgcattcaaacacttccaaatgatagacctgcaatgagtagagttattgaaatgttagaag |
31214663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 31171394 - 31171328
Alignment:
| Q |
332 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattaggttcaagtgt |
398 |
Q |
| |
|
|||||| |||||||||||||| |||||| || ||||||| |||||| |||||||| |||||||||| |
|
|
| T |
31171394 |
taaccttttcaaatgaagacaatctccatccctttaatcttcttgttaagcaattgagttcaagtgt |
31171328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 44036041 - 44036105
Alignment:
| Q |
132 |
ggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgtt |
196 |
Q |
| |
|
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|
|
| T |
44036041 |
ggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgtt |
44036105 |
T |
|
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