View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_high_9 (Length: 440)
Name: NF9444_high_9
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 44895254 - 44895466
Alignment:
| Q |
22 |
gttaatacattcctcttaatttttaaaaagacaatgcactttgttattgttgttgtgtctgtattctaacctctacatgataggtggactatagagagat |
121 |
Q |
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| T |
44895254 |
gttaatatattcctcttaatttttaaaaagataatgcactttgttattgttgttgtgtctgtattctaacctctacatgataggaggactatagagagac |
44895353 |
T |
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| Q |
122 |
ctacttcgaagcttcaaaaataagagcaagggattacaactccattgatggcc-aaaaattcgatagatgaattggtgnnnnnnngaagttattttggta |
220 |
Q |
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| T |
44895354 |
ctacttcgaagcttcaaaaataagagcaagggattacaactccattgatggccaaaaaaatcgatggatgaattgttgaaaaaaagaagttattttggta |
44895453 |
T |
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| Q |
221 |
aactaataattgt |
233 |
Q |
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||||||||||||| |
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| T |
44895454 |
aactaataattgt |
44895466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 226 - 343
Target Start/End: Original strand, 44895844 - 44895961
Alignment:
| Q |
226 |
ataattgtttaacatggttaaaaggaagttaacaaaaatatatataaattgggatcaaaatatataattcagtatatttgaatggaggataatgcatgtt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44895844 |
ataattgtttaacatggttaaaaggaagttaacaaaaatatatataaattgggatcaaaatatataattcagtatatttgaatggaggattatgcatgtt |
44895943 |
T |
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| Q |
326 |
ttaaaacatgggatgaga |
343 |
Q |
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| T |
44895944 |
ttaaaacatgggatgaga |
44895961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 51358247 - 51358156
Alignment:
| Q |
106 |
tggactatagagagatctacttcgaagcttcaaaaataagagcaagggattacaactccattgatggcca-aaaattcgatagatgaattgg |
196 |
Q |
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|||| |||| ||||| |||||| |||||| ||| |||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| |
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| T |
51358247 |
tggattatacagagacctactttaaagcttgggaaacaagagcaagggattactactcctttgatggccaaaaaaaccgatagatgaattgg |
51358156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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