View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_low_104 (Length: 251)
Name: NF9444_low_104
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_104 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 34331415 - 34331627
Alignment:
| Q |
17 |
cagagagttacttaattgtgaagctcaatgccatgacttatgccatttagatagatcatagagccattttatttgcacaaacatatatgtaatgtagtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34331415 |
cagagagttacttaattgtgaagctcaatgccatgacttatgccatttagatagatcatagagccattttatttgcacaaacatatatgtaatgtagtat |
34331514 |
T |
|
| Q |
117 |
tctatgttgatttatggggcagagattataagctcttctaatttttgacacctgttattgctattattactcaatgtcatatcatatgctattatattta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34331515 |
tctatgttgatttatggggcagagattataagctcttctaatttttgacacctgttattgctattattactcaatgtcatatcatatgctattatattta |
34331614 |
T |
|
| Q |
217 |
tacaagttatgca |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34331615 |
tacaagttatgca |
34331627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University