View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_112 (Length: 247)
Name: NF9444_low_112
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 2331011 - 2330795
Alignment:
| Q |
19 |
gaaacaccttattcccacatctacatttccatgctagaaggtaataagtatcattatcatccccacgagataacactttgtaactctttcgtttttgtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2331011 |
gaaacaccttattcccacatctacatttccatgctagaaggtaataagtatcattatcatccccacgagataacactttgtaactctttcgtttttgtga |
2330912 |
T |
|
| Q |
119 |
aacaaccaaagttgctatacaaggcctacaattcatgcacttatttaaacaagcaggaggctttgaccctatcaccatttttctgtcttccaagctatca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2330911 |
aacaaccaaagttgctatacaaggcctacaattcatgcacttatttaaacaagcaggaggctttgaccctatcaccatttttctgtcttgcaagctatca |
2330812 |
T |
|
| Q |
219 |
tttctctccaacaccaa |
235 |
Q |
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||||||||||||||||| |
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| T |
2330811 |
tttctctccaacaccaa |
2330795 |
T |
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