View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_119 (Length: 237)
Name: NF9444_low_119
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_119 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18700924 - 18700701
Alignment:
| Q |
1 |
tgtacgacgaacaaccacatgtgacagataagaagaagggtagagctctttaaagaagctgtcaacactgtcactgatgctgctagaagaagtgggaatg |
100 |
Q |
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| T |
18700924 |
tgtacgacgaacaaccacatgtgacagataagaagaagggtagagctctttaaagaagctgtcgacactgtcactgatgctgctagaagaagtgggaatg |
18700825 |
T |
|
| Q |
101 |
ctgttaactaaaatggcgaactggtgaggctgtggtttggatgaataaaagtacgaaattcttctagaagatatgagtttatattcctgaagattgaaat |
200 |
Q |
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| T |
18700824 |
ctgttaactaaaatggcgaactgatgaggctgtggtttggatgaataaaagtaagaaattcttctagaagatatgagtttatattcctgaagattgaaat |
18700725 |
T |
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| Q |
201 |
aatattgagaaatgagtaggttat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
18700724 |
aatattgagaaatgagtaggttat |
18700701 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 32067404 - 32067219
Alignment:
| Q |
8 |
cgaacaaccacatgtgacagataagaagaagggtagagctctttaaagaagctgtcaacactgtcactgatgctgcta---gaagaagtgggaatgctgt |
104 |
Q |
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|||| ||| |||||||| ||||| | ||| ||||| | |||| ||||||||||||||||||| |||||||| |||| | |||||||| ||||| |||| |
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| T |
32067404 |
cgaataacgacatgtgagagatatgtagacgggtataactctctaaagaagctgtcaacactctcactgatactgcaacttgaagaagtaggaatactgt |
32067305 |
T |
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| Q |
105 |
taactaaaatggcgaactggtgaggctgtggtttggatgaataaaagtacgaaattcttctagaagatatgagtttatattcctga |
190 |
Q |
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||||||||||| |||||| || ||| | |||||||||||| |||| || ||||||||| | |||| |||| ||||||||||||| |
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| T |
32067304 |
gaactaaaatggtgaactgatgtggcagaggtttggatgaagaaaaataagaaattcttttggaagctatgtatttatattcctga |
32067219 |
T |
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