View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_low_12 (Length: 547)
Name: NF9444_low_12
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 40597548 - 40598076
Alignment:
| Q |
1 |
aattcgcatagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40597548 |
aattcgcatagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctcc |
40597647 |
T |
|
| Q |
101 |
atcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40597648 |
atcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatt |
40597747 |
T |
|
| Q |
201 |
tgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40597748 |
tgccatttggccattgaatgtctcagactatctagtgatgctttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcg |
40597847 |
T |
|
| Q |
301 |
gtaacccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40597848 |
gtaacccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaacaa |
40597947 |
T |
|
| Q |
401 |
agtccaagattcctctatagataagggaccaagttgaatattccttttggagtgaatcaattcacaatcttgttgggcaagtgcggtcaaaaggatcttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40597948 |
agtccaagattcctctatagataagggaccaagttgaatattccttttggagtgcatcaattcacaatcttgttgggcaagtgcggtcaaaaggatcttg |
40598047 |
T |
|
| Q |
501 |
catcgattactattacaaggaatgcctac |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40598048 |
catcgattactattacaaggaatgcctac |
40598076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 40387430 - 40386902
Alignment:
| Q |
1 |
aattcgcatagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctcc |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| || |||||| |||||||||||||| |||| ||||||| | ||| ||||||||||||||| | |
|
|
| T |
40387430 |
aatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgcatttctaagacaaggtgaaactcggtccccagtgtgcagtccttc |
40387331 |
T |
|
| Q |
101 |
atcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| | | ||| ||||||||||||||||||| |||||||| ||||||||||| | || || |
|
|
| T |
40387330 |
atcatccatgaaagtcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaagagtagcgagtatcttcccctctaaaactgagaaacatc |
40387231 |
T |
|
| Q |
201 |
tgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcg |
300 |
Q |
| |
|
| ||||| || |||||||||||| | | ||||||||| || ||||||||| |||||||||| ||||| |||||| || | | | ||| ||| | |
|
|
| T |
40387230 |
tcccattgagcagttgaatgtctcaaattgtctagtgatttttcccattcctccattggtttacttcttacggaagaccctgccttaatgatttttcctg |
40387131 |
T |
|
| Q |
301 |
gtaacccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaacaa |
400 |
Q |
| |
|
||||||| || |||||||| | || |||||||||||||||||||||||||||||| || ||||| | || || |||| || |||| ||||| ||||| |
|
|
| T |
40387130 |
gtaacccatcacattcaaaagcaatttcacgtgccacattcaataagtcaaatgaggaggagtgatcctcttcgagaatgcctgaatatttttcaaacaa |
40387031 |
T |
|
| Q |
401 |
agtccaagattcctctatagataagggaccaagttgaatattccttttggagtgaatcaattcacaatcttgttgggcaagtgcggtcaaaaggatcttg |
500 |
Q |
| |
|
||| ||| ||||||| ||||||||||| ||||| |||| ||||||| ||| || || ||||||| || |||| | ||||||||||||| | |||| |
|
|
| T |
40387030 |
cgtcgaagcttcctctgtagataagggatcaagtagaatcttcctttgacagtaaactaagtcacaatatttttggcgacgtgcggtcaaaagtaccttg |
40386931 |
T |
|
| Q |
501 |
catcgattactattacaaggaatgcctac |
529 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |
|
|
| T |
40386930 |
catcgattactattagaaggaattcctac |
40386902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 40334152 - 40333624
Alignment:
| Q |
1 |
aattcgcatagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctcc |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| || |||||| |||||||||||||| |||| ||||||| | ||| ||||||||||||||| | |
|
|
| T |
40334152 |
aatttgcatagttttcagacaaaacaataatcgaaagtcttgatgcttcaattgcatttctaagacaaggtgaaactcggtccccagtgtgcagtccttc |
40334053 |
T |
|
| Q |
101 |
atcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| | | ||| ||||||||||||||||||| |||||||| ||||||||||| | || || |
|
|
| T |
40334052 |
atcatccatgaaagtcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaagagtagcgagtatcttcccctctaaaactgagaaacatc |
40333953 |
T |
|
| Q |
201 |
tgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcg |
300 |
Q |
| |
|
||||||| || |||||||||||| | | | ||||||| || ||||||||| | || ||||| ||||||| |||| || | | | ||| ||| | |
|
|
| T |
40333952 |
tgccattgagctgttgaatgtctcaaattgtgtagtgatttttcccattcctccaatgatttacttcttaagaaagacccttccttaatgattcttcctg |
40333853 |
T |
|
| Q |
301 |
gtaacccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaacaa |
400 |
Q |
| |
|
||||||| || |||||||| | |||||||||||||||||| |||||||||||||| || ||||| | || || |||| || |||||||||| ||||| |
|
|
| T |
40333852 |
gtaacccatcacattcaaaagcaacttcacgtgccacattgaataagtcaaatgaggaggagtgatcctcttctagaattcccgaatgtttttcaaacaa |
40333753 |
T |
|
| Q |
401 |
agtccaagattcctctatagataagggaccaagttgaatattccttttggagtgaatcaattcacaatcttgttgggcaagtgcggtcaaaaggatcttg |
500 |
Q |
| |
|
|||| ||| ||||||| ||||||| ||| ||||| |||| | ||||| |||| || || || |||| || |||| | ||||||||||||| | |||| |
|
|
| T |
40333752 |
agtcgaagcttcctctgtagataatggatcaagtagaatctccctttgacagtgcattaagtcgcaatatttttggcgacgtgcggtcaaaagaaccttg |
40333653 |
T |
|
| Q |
501 |
catcgattactattacaaggaatgcctac |
529 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |
|
|
| T |
40333652 |
catagattactattacaaggaattcctac |
40333624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 40377185 - 40376657
Alignment:
| Q |
1 |
aattcgcatagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctcc |
100 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || || |||| | |||||||||||||| |||||| |||||||| |||||||||||||| |||| |
|
|
| T |
40377185 |
aatttgcatagttttcagacaaaacaataattgaaagtcttgttgcttcaattgcatttcgaagagaatgtgaaattcggtctccagtgtgcaatccttt |
40377086 |
T |
|
| Q |
101 |
atcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatt |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| | | ||| |||||||||| |||||||| ||||| | ||||||||||| | ||| || |
|
|
| T |
40377085 |
atcatccatgaaaatcttgaatcccccttgggataaagcttgaaaaagactacctgtaaaggagtagcgagtatccccccctctaaaactgaggaacatc |
40376986 |
T |
|
| Q |
201 |
tgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcg |
300 |
Q |
| |
|
||||||| || |||||||||||| | | ||||||||| || |||||| || | || ||||| |||||||||||| || | | | ||| ||| | |
|
|
| T |
40376985 |
tgccattgatccgttgaatgtctcaaattgtctagtgatttttcccattcttccaatgatttacttcttaaggaagacccttccttaatgatttttcctg |
40376886 |
T |
|
| Q |
301 |
gtaacccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaacaa |
400 |
Q |
| |
|
|||||| || |||||||| | ||||||||||||||||||||||||||||||||| || ||||| | || || |||| || |||||||||| ||||| |
|
|
| T |
40376885 |
gtaacctatcacattcaaaagcaacttcacgtgccacattcaataagtcaaatgaggaggagtgatcctcttcgagaatgcctgaatgtttttcaaacaa |
40376786 |
T |
|
| Q |
401 |
agtccaagattcctctatagataagggaccaagttgaatattccttttggagtgaatcaattcacaatcttgttgggcaagtgcggtcaaaaggatcttg |
500 |
Q |
| |
|
|||| ||| ||||||| ||||||| | | ||||| ||| | ||||| | || || || ||||||| || |||| | ||||||||||||| | |||| |
|
|
| T |
40376785 |
agtcgaagcttcctctgtagataatgaatcaagtaaaatctccctttgacaatgcattaagtcacaatatttttggctacgtgcggtcaaaagaaccttg |
40376686 |
T |
|
| Q |
501 |
catcgattactattacaaggaatgcctac |
529 |
Q |
| |
|
||| |||||||| |||||||||| ||||| |
|
|
| T |
40376685 |
catagattactagtacaaggaattcctac |
40376657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 511
Target Start/End: Complemental strand, 40278026 - 40277521
Alignment:
| Q |
6 |
gcatagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctccatcat |
105 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||||| | ||||||||| ||||| |||||| |||||||||| |||||||||||| || || || ||| |
|
|
| T |
40278026 |
gcatagttttcagacaaaacaacaattgaaagccttgctgcttcaattgaatttaaaagagttggtgaaatttggtctccagtgtgtaggccatcaccat |
40277927 |
T |
|
| Q |
106 |
ccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatttgcca |
205 |
Q |
| |
|
| | |||||| ||||| || ||| |||||| | ||| ||| ||||||||| | || ||| |||||| ||||||||||| | ||||||||| | |
|
|
| T |
40277926 |
caaagaaggttgtgaattccatttggtctaaagcatgataaagagaacctgtaaatgtgtcgcgggtatctatccctctaaaactgaggaaaatttggta |
40277827 |
T |
|
| Q |
206 |
tttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcggtaac |
305 |
Q |
| |
|
||| | | |||||| ||| ||| ||||| |||||||||||| ||| ||||||| |||||||||| | ||| ||||||| | | |||| |||||| |
|
|
| T |
40277826 |
tttagttaacgaatgtttcaaactgtctagcaatactttccatttctctattggttcacctcttaagcgatgtcctacatcttctacttttctaggtaac |
40277727 |
T |
|
| Q |
306 |
ccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaacaaagtcc |
405 |
Q |
| |
|
||||| |||| | | |||||||||||| | |||||||||||||| || | ||| | | |||| | | |||| || | ||||| ||||||||||| |
|
|
| T |
40277726 |
ccttcacatttggaagcaacttcacgtgcgagattcaataagtcaatcgagcataagtactcatcatgaatactacctgatttttttttgaacaaagtcc |
40277627 |
T |
|
| Q |
406 |
aagattcctctatagataagggaccaagttgaatattccttttggagtgaatcaattcacaatcttgttgggcaagtgcggtcaaaaggatcttgcatcg |
505 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||| ||||||| ||| ||||| ||||| ||||||||| || || | ||||||||| ||||||||| |
|
|
| T |
40277626 |
aagtttcctctgtagataagggattaagttgaatcttcctttgacagtacatcaagtcacagtcttgttggaaaaatgtgatcaaaaggaccttgcatcg |
40277527 |
T |
|
| Q |
506 |
attact |
511 |
Q |
| |
|
|||||| |
|
|
| T |
40277526 |
attact |
40277521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 100 - 529
Target Start/End: Complemental strand, 40326482 - 40326062
Alignment:
| Q |
100 |
catcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||| | | ||||| ||| |||||| ||||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
40326482 |
catcatccatgaaggtcttgaacccctctcgacacagaatattatagagaaaacctgtgaaagagtagcgagtatcttctcctttaaaacttagaaaaat |
40326383 |
T |
|
| Q |
200 |
ttgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctc |
299 |
Q |
| |
|
| ||| | | |||||| | ||||| |||| ||| ||||||| ||||| || ||||| | |||||||||||||||| | ||| |||||||||| |
|
|
| T |
40326382 |
atcatattgagaccttgaatatttcagatggtctaacgatgctttccactcctcgataggtttgcttcttaaggaagatcccgcgtctataattgttcta |
40326283 |
T |
|
| Q |
300 |
ggtaacccttcgcattcaaaggaaacttcacgtgccacattcaataagtcaaatgaagacgagtgcccttcatcatgaataccagaatgtttttggaaca |
399 |
Q |
| |
|
||||||||||| ||||||| | ||| | ||||||||| | ||| |||||||| |||| || || || |||||||||| ||||| |
|
|
| T |
40326282 |
ggtaacccttcacattcaatagcaacattgtatgccacatttttcaggtcggatgaagac---------tcattatctatccctgaatgttttttgaaca |
40326192 |
T |
|
| Q |
400 |
aagtccaagattcctctatagataagggaccaagttgaatattccttttggagtgaatcaattcacaatcttgttgggcaagtgcggtcaaaaggatctt |
499 |
Q |
| |
|
||||||||| ||||||| | ||||| |||| ||||||||| | ||||| | || || || ||||||||||||||| | || ||||||||||| ||| |
|
|
| T |
40326191 |
aagtccaagcttcctctgtggataaaggactaagttgaatctccctttgacaatgtataaactcacaatcttgttggcgacatgtggtcaaaaggacctt |
40326092 |
T |
|
| Q |
500 |
gcatcgattactattacaaggaatgcctac |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40326091 |
gcatcgattactattacaaggaatgcctac |
40326062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 62 - 319
Target Start/End: Complemental strand, 40303634 - 40303377
Alignment:
| Q |
62 |
aagagtgggtgaaattttgtctccagtgtgcagtcctccatcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaa |
161 |
Q |
| |
|
||||| ||||||||||| ||| ||| | |||| ||| |||| ||||||||| || |||||||| || |||| | ||| | ||| ||| ||| |||||| |
|
|
| T |
40303634 |
aagagagggtgaaatttggtccccaatatgcaatcccccataatccatgaatgttttgaatccttctcgacagagagcatcatagagaaaacccgtaaaa |
40303535 |
T |
|
| Q |
162 |
gagtagcgtgtatcttctcctctaaaacttaagaaaatttgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtt |
261 |
Q |
| |
|
||||| || |||||||||||||||||||| | |||||| |||||| ||||||||| | |||| | | ||| ||| ||||||| ||||| | || | |
|
|
| T |
40303534 |
gagtaccgagtatcttctcctctaaaactgatgaaaatctgccatcgagccattgaacgcctcaaattgtctgaagattctttccactcctccacaggat |
40303435 |
T |
|
| Q |
262 |
tacctcttaaggaagatcccacatctttaattgttctcggtaacccttcgcattcaaa |
319 |
Q |
| |
|
||||| |||||||||||||||| ||| | ||||| | ||||||||||| |||||||| |
|
|
| T |
40303434 |
taccttttaaggaagatcccacttctattattgtaccaggtaacccttcacattcaaa |
40303377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 40256898 - 40257205
Alignment:
| Q |
10 |
agttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctccatcatccat |
109 |
Q |
| |
|
||||||| || |||| ||||| || ||||||||| ||||||||||||| ||||| | ||||||||| ||| ||| | || |||||| |||||||| |
|
|
| T |
40256898 |
agttttcggataaaacaataatggaaagccttgatgcttcaattgcattgagaagtgaaagtgaaatttggtcaccaccctccaatcctccttcatccat |
40256997 |
T |
|
| Q |
110 |
gaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaatttgccatttg |
209 |
Q |
| |
|
|||||| || ||||| | || || ||||| ||| ||| ||||||||||| || || ||||||||||||| ||| || | ||||| || | |
|
|
| T |
40256998 |
gaaggttttaaatccgacctggcacaaagcacgatagagagagcctgtaaaagaataacgagtatcttctcctcgaaagctgagaaaaatatggtagcga |
40257097 |
T |
|
| Q |
210 |
gccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctcggtaaccctt |
309 |
Q |
| |
|
|||||||||||||||| || |||| |||| ||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
40257098 |
gccattgaatgtctcaagctgtctaatgattctttccactcctcaacaggtttactttttaaggaagatcccacttctttaattgtaccaggtaaccctt |
40257197 |
T |
|
| Q |
310 |
cgcattca |
317 |
Q |
| |
|
| |||||| |
|
|
| T |
40257198 |
cacattca |
40257205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 318
Target Start/End: Complemental strand, 40311202 - 40310984
Alignment:
| Q |
100 |
catcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||| || | | |||| ||| | ||| ||| ||| |||||||||| || ||||||| |||||||||||| | |||||| |
|
|
| T |
40311202 |
catcatccatgaaggtcttgaacccttcccggcatagagcatcatagagaaaacccgtaaaagagtcacgagtatcttttcctctaaaactgatgaaaat |
40311103 |
T |
|
| Q |
200 |
ttgccatttggccattgaatgtctcagactatctagtgatactttccattcctcaattggtttacctcttaaggaagatcccacatctttaattgttctc |
299 |
Q |
| |
|
| | | | ||| |||||||| |||| |||| |||| |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
40311102 |
atcgtactgagacatagaatgtcttagaccgtctaatgatgttttccactcctcaataggtttacttcttaaggatgatcccacatctttaattgttcca |
40311003 |
T |
|
| Q |
300 |
ggtaacccttcgcattcaa |
318 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
40311002 |
ggcaacccttgacattcaa |
40310984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 40310825 - 40310783
Alignment:
| Q |
486 |
gtcaaaaggatcttgcatcgattactattacaaggaatgccta |
528 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
40310825 |
gtcaaaagaaccttgcatcgattactattacaaggaatgccta |
40310783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 40283441 - 40283392
Alignment:
| Q |
234 |
agtgatactttccattcctcaattggtttacctcttaaggaagatcccac |
283 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
40283441 |
agtgatgctttccattcctcaattggtttacttccgaaggaagatcccac |
40283392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 40283554 - 40283446
Alignment:
| Q |
100 |
catcatccatgaaggtcttgaatcccccttgacataaagctttatacagattacctgtaaaagagtagcgtgtatcttctcctctaaaacttaagaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||| | | || ||||| | ||| ||| |||||||||||| | || |||||||| ||||||||||| | |||||| |
|
|
| T |
40283554 |
catcatccatgaaggtcttgaacccctcccggcacaaagcatcatagagaaaacctgtaaaagactgacgagtatcttcccctctaaaactgaggaaaat |
40283455 |
T |
|
| Q |
200 |
ttgccattt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
40283454 |
ctgccattt |
40283446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 40406536 - 40406421
Alignment:
| Q |
10 |
agttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctccatcatccat |
109 |
Q |
| |
|
||||||||||||||| | ||| || |||||||||| ||||||||| | |||||||| ||||||||| || |||| | || ||| |||||||||| |
|
|
| T |
40406536 |
agttttcagacaaaacaacaattgaaagccttgatttttcaattgcttcgagaagagtttgtgaaatttggtttccaccctccaatccctcatcatccat |
40406437 |
T |
|
| Q |
110 |
gaaggtcttgaatccc |
125 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
40406436 |
gaagatcttgaatccc |
40406421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 40362506 - 40362388
Alignment:
| Q |
7 |
catagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctccatcatc |
106 |
Q |
| |
|
|||| ||||||||||||| | ||| || |||||||||| ||||||||| || || ||||| ||||||||| || |||| | || ||| ||||||| |
|
|
| T |
40362506 |
cataattttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtagagtttgtgaaatttggtttccaccctccaatccctcatcatc |
40362407 |
T |
|
| Q |
107 |
catgaaggtcttgaatccc |
125 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
40362406 |
catgaagatcttgaatccc |
40362388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 40457304 - 40457422
Alignment:
| Q |
7 |
catagttttcagacaaaatgataatcgacagccttgattcttcaattgcatttagaagagtgggtgaaattttgtctccagtgtgcagtcctccatcatc |
106 |
Q |
| |
|
|||| ||||| ||||||| | ||| || |||||||||| ||||||||| |||| |||||| ||||||||| || |||| | || ||| ||||||| |
|
|
| T |
40457304 |
cataattttcggacaaaacaacaattgagagccttgatttttcaattgcttttaaaagagtttgtgaaatttggtttccaccctccaatccctcatcatc |
40457403 |
T |
|
| Q |
107 |
catgaaggtcttgaatccc |
125 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
40457404 |
catgaagatcttgaatccc |
40457422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 40310915 - 40310882
Alignment:
| Q |
396 |
aacaaagtccaagattcctctatagataagggac |
429 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
40310915 |
aacaaagtccaagcttcctctatagataagggac |
40310882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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