View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_126 (Length: 230)

Name: NF9444_low_126
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_126
NF9444_low_126
[»] chr4 (2 HSPs)
chr4 (10-212)||(696575-696777)
chr4 (10-212)||(764873-765075)
[»] chr3 (2 HSPs)
chr3 (10-59)||(36985029-36985078)
chr3 (10-59)||(37010468-37010517)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 696575 - 696777
Alignment:
Q  10 agcagaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagcttcccttccaagtaatggtcagttaaactacagacataagtacgctcaca 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  696575 agcaaaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagcttcccttccaagtaatggtcagttaaactacagacataagtacgctcaca 696674  T
Q  110 ttcgagactcttttgtagtacaattattgtgcaccatacatgagtttgtgctacagtctttgaagtacaattatttagcatgcacaaatagccaaatttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  696675 ttcgagactcttttgtagtacaattattgtgcaccatacatgagtttgtgctacagtctttgaagtacaattatttagcatgcacaaatagccaaatttg 696774  T
Q  210 tgt 212  Q
    |||    
T  696775 tgt 696777  T

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Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 764873 - 765075
Alignment:
Q  10 agcagaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagcttcccttccaagtaatggtcagttaaactacagacataagtacgctcaca 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  764873 agcaaaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagcttcccttccaagtaatggtcagttaaactacagacataagtacgctcaca 764972  T
Q  110 ttcgagactcttttgtagtacaattattgtgcaccatacatgagtttgtgctacagtctttgaagtacaattatttagcatgcacaaatagccaaatttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  764973 ttcgagactcttttgtagtacaattattgtgcaccatacatgagtttgtgctacagtctttgaagtacaattatttagcatgcacaaatagccaaatttg 765072  T
Q  210 tgt 212  Q
    |||    
T  765073 tgt 765075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 36985078 - 36985029
Alignment:
Q  10 agcagaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagc 59  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36985078 agcaaaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagc 36985029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 37010517 - 37010468
Alignment:
Q  10 agcagaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagc 59  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37010517 agcaaaacctgtgttaaaccaaactcaattcaaccaagggccacaaaagc 37010468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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