View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_127 (Length: 229)

Name: NF9444_low_127
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_127
NF9444_low_127
[»] chr2 (1 HSPs)
chr2 (1-100)||(7654216-7654315)
[»] chr1 (3 HSPs)
chr1 (117-174)||(6590006-6590063)
chr1 (117-177)||(3416078-3416138)
chr1 (116-177)||(28083915-28083976)
[»] chr3 (2 HSPs)
chr3 (117-177)||(25359601-25359661)
chr3 (34-104)||(39256572-39256642)
[»] chr8 (1 HSPs)
chr8 (115-177)||(26668548-26668610)
[»] chr6 (1 HSPs)
chr6 (82-127)||(20570441-20570486)
[»] chr4 (1 HSPs)
chr4 (34-110)||(2635060-2635136)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7654216 - 7654315
Alignment:
Q  1 atcatgtcaagttctttgcatttatgtagtgcttgtttggttccacttttggagagggcaaaactatttatagaagagtaaaattgattttgacgtgttt 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  7654216 atcatgtcaagttttttgcatttatgtagtgcttgtttgattccacttttggagagggcaaaactatttatagaagagtaaaattacttttgacatgttt 7654315  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 6590063 - 6590006
Alignment:
Q  117 aattgattatacttaatgttacaatttgtagttttttattccataattaatttttaca 174  Q
    ||||||||||| |||| |||| ||||||||||||||||||  |||||| |||||||||    
T  6590063 aattgattatatttaaagttagaatttgtagttttttattatataattgatttttaca 6590006  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 3416078 - 3416138
Alignment:
Q  117 aattgattatacttaatgttacaatttgtagttttttattccataattaatttttacacac 177  Q
    |||||||||||||||| ||||  |||||||||||||||||  | |||| ||||||||||||    
T  3416078 aattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacacac 3416138  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 28083976 - 28083915
Alignment:
Q  116 taattgattatacttaatgttacaatttgtagttttttattccataattaatttttacacac 177  Q
    ||||||||| ||||| | | || ||||||||| |||| |||| |||||||||||||||||||    
T  28083976 taattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacac 28083915  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 25359661 - 25359601
Alignment:
Q  117 aattgattatacttaatgttacaatttgtagttttttattccataattaatttttacacac 177  Q
    |||||||| ||||| | |||| ||||||||||||||||||| |||||| ||||| ||||||    
T  25359661 aattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacac 25359601  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 39256572 - 39256642
Alignment:
Q  34 tgtttggttccacttttggagagggcaaaactatttatagaagagtaaaattgattttgacgtgtttgatt 104  Q
    ||||||||||||||||||||||   ||||| || || |||| | ||| ||||||||||||| |||||||||    
T  39256572 tgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaattgattttgacatgtttgatt 39256642  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 26668548 - 26668610
Alignment:
Q  115 ataattgattatacttaatgttacaatttgtagttttttattccataattaatttttacacac 177  Q
    |||||||||| |||||||   |||||||||||||||||||||| |||||| ||| | ||||||    
T  26668548 ataattgattctacttaaaactacaatttgtagttttttattctataattgattctcacacac 26668610  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 20570441 - 20570486
Alignment:
Q  82 aattgattttgacgtgtttgattgttttttactataattgattata 127  Q
    ||||||||||||| ||||||| ||||||| | ||||||||||||||    
T  20570441 aattgattttgacatgtttgaatgtttttgagtataattgattata 20570486  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 2635060 - 2635136
Alignment:
Q  34 tgtttggttccacttttggagagggcaaaactatttatagaagagtaaaattgattttgacgtgtttgattgttttt 110  Q
    ||||||||| ||||||| ||| |  ||||| |  || |||||| ||||||||||||||||| |||||||||| ||||    
T  2635060 tgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgctttt 2635136  T

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