View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_129 (Length: 228)
Name: NF9444_low_129
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_129 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 12951159 - 12950997
Alignment:
| Q |
19 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaatgaaggagtccgggtataactaagaagaatgcgttcattcttcaatcttttcttt |
118 |
Q |
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| T |
12951159 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaatgaaggagtccgggtataactaagaagaatgcgttcatgcttcaatcttttcttt |
12951060 |
T |
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| Q |
119 |
ggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggat |
181 |
Q |
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| T |
12951059 |
ggtgctttgagatcgccactcctaaaacacaacaacaccaacattggattttttaaattggat |
12950997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 12889608 - 12889558
Alignment:
| Q |
19 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaatgaagg |
69 |
Q |
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| T |
12889608 |
agtagggtcccagagcctgcaagatgacaaattaactaagaagaataaagg |
12889558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 14401907 - 14402021
Alignment:
| Q |
98 |
tcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggatctttgtataacaacgg |
197 |
Q |
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| T |
14401907 |
tcatgcttcaatcttttcttgggtgatttatgagcgccactcctttcacacaacaactccaatattggattccttatatcggatcatcaaataacaactg |
14402006 |
T |
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| Q |
198 |
taaatccgaccctat |
212 |
Q |
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| T |
14402007 |
taaatccggccctat |
14402021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 30937910 - 30937795
Alignment:
| Q |
97 |
ttcattcttcaatcttttctttggtgctttgagatcgccactcctaaaacacaacaacaccaatattggattctttaaattggatctttgtataacaacg |
196 |
Q |
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| T |
30937910 |
ttcatgcttcaatcttttcttggatactttgtgatcaccactcctttcacacatcaactccaacattggattctgtatgctggatctttttataccaact |
30937811 |
T |
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| Q |
197 |
gtaaatccgaccctat |
212 |
Q |
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| T |
30937810 |
gtaaatccggccctat |
30937795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 20909406 - 20909462
Alignment:
| Q |
156 |
ccaatattggattctttaaattggatctttgtataacaacggtaaatccgaccctat |
212 |
Q |
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| T |
20909406 |
ccaacattggattctttatactggatctttctgtaacaactgtaaatccggccctat |
20909462 |
T |
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