View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_13 (Length: 524)

Name: NF9444_low_13
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_13
NF9444_low_13
[»] chr5 (14 HSPs)
chr5 (23-453)||(40597181-40597611)
chr5 (16-291)||(40256684-40256959)
chr5 (29-329)||(40387373-40387673)
chr5 (29-308)||(40377128-40377407)
chr5 (29-308)||(40334095-40334374)
chr5 (33-335)||(40277978-40278280)
chr5 (34-326)||(40303638-40303930)
chr5 (26-118)||(40409194-40409286)
chr5 (23-169)||(40406482-40406628)
chr5 (95-174)||(40407931-40408010)
chr5 (27-169)||(40283594-40283736)
chr5 (32-169)||(40457215-40457352)
chr5 (477-518)||(40597116-40597157)
chr5 (27-106)||(40326522-40326601)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 453
Target Start/End: Complemental strand, 40597611 - 40597181
Alignment:
Q  23 cttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttg 122  Q
    ||||| ||||||||||||| ||||||||| || |||||  |||| || ||||||| |||  |||| ||||||||||| || |||||||| || ||| | |    
T  40597611 cttctaaatgcaattgaagaatcaaggctgtcgattatcattttgtctgaaaactatgcgaattcctcatggtgtcttgaagaacttgtcaaaattatgg 40597512  T
Q  123 agtgtatgaaaatgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaagacatggc 222  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  40597511 agtgtatgaaattgaagaatcaattagtttggccaatcttttacaaagtgaaaccgtcagacataaggcatttgagaaattgttatggcgaagacatggc 40597412  T
Q  223 tcaacatgaaaataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaaaggcttatacaacc 322  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40597411 tcaacatgaaaataattttggaattgactcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaaaggcttatacaacc 40597312  T
Q  323 gggtatgtaatatccttcaaaagacttctatttgcattattctataataaccaatttttactttactagcgatagcagttaagaatatgatataatataa 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40597311 gggtatgtaatatccttcaaaagacttctatttgcattattctataataaccaatttttactttactagcgatagcagttaagaatatgatataatataa 40597212  T
Q  423 ttccatcgtctcggaaggtatgtgaattggt 453  Q
    |||||| ||||||||||||||||||||||||    
T  40597211 ttccatagtctcggaaggtatgtgaattggt 40597181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 40256959 - 40256684
Alignment:
Q  16 actttcacttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40256959 actttcacttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaag 40256860  T
Q  116 attcttgagtgtatgaaaatgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||  ||||| ||  ||  ||  ||||||| ||||    
T  40256859 attcttgagtgtatgaaaatgaagaatcaattagtttggccaattttttacaaagtggagccatcagatgtaaggtatcagaagaatagttatggtaaag 40256760  T
Q  216 acatggctcaacatgaaaataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagt 291  Q
      ||| || ||||||||||||||||||||| |||||  ||||   |||| |||||||  |||||||||||| ||||    
T  40256759 caatgactgaacatgaaaataattttggaaatgattatgagaagatacaaaaatggagatcagctttgtttcaagt 40256684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 29 - 329
Target Start/End: Original strand, 40387373 - 40387673
Alignment:
Q  29 aatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgta 128  Q
    |||||||||||||||||||| ||||| ||||||||||| || ||||||| |||| ||||  |||||||||| ||||||||||| ||||||||||| ||||    
T  40387373 aatgcaattgaagcatcaagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgta 40387472  T
Q  129 tgaaaatgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaagacatggctcaaca 228  Q
     ||||  ||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  40387473 agaaatggaataatcaattagtttggccaatcttttacaaagtagagccatcagacataaggcatttgagaaatggttatggcaaagacatggctcaaca 40387572  T
Q  229 tgaaaataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaaaggcttatacaaccgggtat 328  Q
    |||||| || || |||||||| || ||||||||||| |||||||||||||| ||| ||||||| || ||||||||||||| | |||| || || ||||||    
T  40387573 tgaaaaaaaattcggaattgactcggagagagtacaaaaatggaagtcagcattgcttgaagtttctaatttgtccggaatgacttacacgactgggtat 40387672  T
Q  329 g 329  Q
    |    
T  40387673 g 40387673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 40377128 - 40377407
Alignment:
Q  29 aatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgta 128  Q
    ||||||||||||||| |||| ||||| ||||||||||| || ||||||| |||| ||||  |||||||||| ||||||||||| ||||||||||| ||||    
T  40377128 aatgcaattgaagcaacaagactttcaattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgta 40377227  T
Q  129 tgaaaatgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaagacatggctcaaca 228  Q
     ||||  ||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40377228 agaaatggaataatcaattagtttggccaatcttttacaaagtagagccatcagacataaggcatttgagaaaaggttatggcaaagacatggctcaaca 40377327  T
Q  229 tgaaaataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaa 308  Q
    |||||| || |||||||| || || ||||||||||| |||||||||||||||||| ||||||| || |||||||| ||||    
T  40377328 tgaaaaaaagtttggaatagactcggagagagtacaaaaatggaagtcagctttgcttgaagtttctaatttgtctggaa 40377407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 40334095 - 40334374
Alignment:
Q  29 aatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgta 128  Q
    |||||||||||||||||||| ||||| ||||||||||| || ||||||| |||| ||||  |||||||||| ||||||||||| ||||||||||| ||||    
T  40334095 aatgcaattgaagcatcaagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgta 40334194  T
Q  129 tgaaaatgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaagacatggctcaaca 228  Q
     ||||  ||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40334195 agaaatggaataatcaattagtttggccaatcttttacaaagtagagccatcagacataaggcatttgagaaaaagttatggcaaagacatggctcaaca 40334294  T
Q  229 tgaaaataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaa 308  Q
    |||||  |  |||||||| || || ||||||||||| ||||||||||| |||||| ||||||| || |||||||||||||    
T  40334295 tgaaagaagatttggaatagactcggagagagtacaaaaatggaagtctgctttgcttgaagtttctaatttgtccggaa 40334374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 33 - 335
Target Start/End: Original strand, 40277978 - 40278280
Alignment:
Q  33 caattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgtatgaa 132  Q
    ||||||||||| |||||||||| ||| ||||||| || ||||||| ||||  |||  |||||||||| ||||||||||| ||||||||||| |||| |||    
T  40277978 caattgaagcagcaaggctttcaattgttgttttgtctgaaaactatgcaagttccacatggtgtcttgatgaacttgtcaagattcttgaatgtaggaa 40278077  T
Q  133 aatgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaagacatggctcaacatgaa 232  Q
    |  ||| ||||||||||||||||| ||||||| ||||||||| || ||||| |||||| || ||||| |||||||||||||||||||||||| |||||||    
T  40278078 atcgaataatcaattagtttggccgatctttttcaaagtggagccatcagaaataaggtatatgagagaatgttatggcaaagacatggctcgacatgaa 40278177  T
Q  233 aataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaaaggcttatacaaccgggtatgtaa 332  Q
    |  |  |||||||| || || ||||||||||| |||||||  ||||||||| | |||||||| ||| | ||||||||| |||||| | ||||||| ||||    
T  40278178 agaagatttggaatagactcggagagagtacaaaaatggagatcagctttgatcgaagtgtctaatatatccggaaagacttatagatccgggtaagtaa 40278277  T
Q  333 tat 335  Q
    |||    
T  40278278 tat 40278280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 326
Target Start/End: Original strand, 40303638 - 40303930
Alignment:
Q  34 aattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgtatgaaa 133  Q
    |||||||||||||| |||||| ||| ||||||| || ||||| | ||||  ||| | ||||||||| ||||| ||||  ||||| ||| |||||| |||     
T  40303638 aattgaagcatcaaagctttcgattgttgttttgtctgaaaattatgcaagttcctaatggtgtcttgatgagcttgcgaagatccttcagtgtaagaag 40303737  T
Q  134 atgaagaatcaattagtttggccaatcttttacaaagtggatccgtcagacataaggcatttgagaaaatgttatggcaaagacatggctcaacatgaaa 233  Q
      |||||||||||| |||||||| ||||||||||||||| | || ||||| ||||| ||| |||||||  ||||||||||| | ||| || ||||| ||     
T  40303738 tcgaagaatcaattggtttggcctatcttttacaaagtgaaaccttcagatataagacatatgagaaatagttatggcaaatatatgactgaacataaac 40303837  T
Q  234 ataattttggaattgattcagagagagtacagaaatggaagtcagctttgtttgaagtgtcgaatttgtccggaaaggcttatacaaccgggt 326  Q
    | || || |||| |||||| |||||| |||||||||||||||||||||| |||||||| ||   |||||| ||||||||||||| || |||||    
T  40303838 aaaaattcggaagtgattctgagagattacagaaatggaagtcagctttttttgaagtttctggtttgtctggaaaggcttataaaatcgggt 40303930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 40409194 - 40409286
Alignment:
Q  26 ctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagatt 118  Q
    ||||| |||||||||  |||||||||||| ||| ||||||| || |||||||||| ||||||  |||||||||| ||||||||||| ||||||    
T  40409194 ctcaaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaactttggatattccacatggtgtcttgatgaacttgtcaagatt 40409286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 40406482 - 40406628
Alignment:
Q  23 cttctcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttg 122  Q
    |||||| | |||||||||  |||||||||||| ||| ||||||| || |||||||||| ||||||  | |||||||| |||||||| |  |||||| |      
T  40406482 cttctcgaagcaattgaaaaatcaaggctttcaattgttgttttgtctgaaaactttggatattccacgtggtgtcttgatgaactagacaagattatca 40406581  T
Q  123 agtgtatgaaaatgaagaatcaattagtttggccaatcttttacaaa 169  Q
    |||| ||||| |  ||||||||||| |||||||| || |||||||||    
T  40406582 agtgcatgaagaccaagaatcaattggtttggcctattttttacaaa 40406628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 40407931 - 40408010
Alignment:
Q  95 tgtctcgatgaacttgttaagattcttgagtgtatgaaaatgaagaatcaattagtttggccaatcttttacaaagtgga 174  Q
    ||||| |||||||||||||| || |||||||||||||| ||||| |||||| | ||||||||||| ||||  ||||||||    
T  40407931 tgtctagatgaacttgttaacatccttgagtgtatgaagatgaaaaatcaacttgtttggccaattttttttaaagtgga 40408010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 40283594 - 40283736
Alignment:
Q  27 tcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtg 126  Q
    |||| |||||||| ||||||||| |||| ||| ||||||| || |||||||||||| ||||  | |||||||| |||||| | || |  |||||| ||||    
T  40283594 tcaaagcaattgaggcatcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtg 40283693  T
Q  127 tatgaaaatgaagaatcaattagtttggccaatcttttacaaa 169  Q
    ||  || |||||||| |||   |||| ||||||||||||||||    
T  40283694 taaaaagatgaagaaccaaaaggttttgccaatcttttacaaa 40283736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 40457352 - 40457215
Alignment:
Q  32 gcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgtatga 131  Q
    |||||||||  ||||||||| || ||| ||||||| |||||||| | || ||||||  |||||||||| ||||||||||| |||||| | ||||| | ||    
T  40457352 gcaattgaaaaatcaaggctctcaattgttgttttgtccgaaaattatggatattcgacatggtgtcttgatgaacttgtgaagattatggagtgcaaga 40457253  T
Q  132 aaatgaagaatcaattagtttggccaatcttttacaaa 169  Q
    | |  || ||| |||| ||||||||| | |||||||||    
T  40457252 agaccaataataaattggtttggccactattttacaaa 40457215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 40597157 - 40597116
Alignment:
Q  477 tgctcttctttatagctgctatcaattgaagtataatctacc 518  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  40597157 tgctcttctttatagctgctatcaattgaagtataatttacc 40597116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 40326522 - 40326601
Alignment:
Q  27 tcaatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaa 106  Q
    |||| |||||||| ||||||||| |||| ||| ||||||| || |||||||||||| ||||  | |||||||| ||||||    
T  40326522 tcaaagcaattgaggcatcaaggatttcaattgttgttttctctgaaaactttgcagattctccctggtgtctagatgaa 40326601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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