View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_135 (Length: 217)
Name: NF9444_low_135
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_135 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 30732708 - 30732887
Alignment:
| Q |
15 |
cacagaaatgtaaaaatagaggtaataaatgaaaacaaatgaaagttaggggggtaagtaaaggatagcctaggtaggtttgcgtttgcactaaaaagga |
114 |
Q |
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| T |
30732708 |
cacagaaatgtaaaaatagaggtaataaatgaaaacaaatgaaagttaggggggtaagtaaaggatggcctaggtaggtttgcgtttgcactaaaaagga |
30732807 |
T |
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| Q |
115 |
tgccacggttcagcagcaaagtacacactagcaagatactgactacaggggagaatgaaatggtcagatagagtgcctaa |
194 |
Q |
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| T |
30732808 |
tgccaaggttcatcagcaaagtacacactagcaagatactgactacaggggagaatgaaatggtcagatatagtgcctaa |
30732887 |
T |
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