View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_136 (Length: 213)
Name: NF9444_low_136
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_136 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 38110699 - 38110865
Alignment:
| Q |
30 |
tatgatatgataccttaccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttct |
129 |
Q |
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| T |
38110699 |
tatgatatgataccttaccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttct |
38110798 |
T |
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| Q |
130 |
cttgcccattgtacatatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
196 |
Q |
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| T |
38110799 |
cttgcccattgtacatatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
38110865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 38085615 - 38085766
Alignment:
| Q |
45 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
144 |
Q |
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| T |
38085615 |
taccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcaca |
38085714 |
T |
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| Q |
145 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
196 |
Q |
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| T |
38085715 |
tatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataa |
38085766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 38142280 - 38142431
Alignment:
| Q |
45 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
144 |
Q |
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| T |
38142280 |
taccttaacattgtttttgtagtattgcttaacaagaggattaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38142379 |
T |
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| Q |
145 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
196 |
Q |
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| T |
38142380 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataa |
38142431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 38155626 - 38155777
Alignment:
| Q |
45 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
144 |
Q |
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| T |
38155626 |
taccttaacattgtttttgtagtattgcttaacaagagggttaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38155725 |
T |
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| Q |
145 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
196 |
Q |
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| T |
38155726 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataa |
38155777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 38090602 - 38090732
Alignment:
| Q |
49 |
ttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtacatatt |
148 |
Q |
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|||||||| |||||||||||||||||||||| || |||||||||||||| ||||| |||| | | ||||| |||||||||||||||| ||||||| |
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| T |
38090602 |
ttaacatgatttttgtagtattgcttaacaagagggtgtgtaaagaagtcgtcgtcattttttatgttatgaccgtgttctcttgcccattgaacatatt |
38090701 |
T |
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| Q |
149 |
tatgttttcctcccaaagcattccaattatt |
179 |
Q |
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| T |
38090702 |
tgtttttgcctccaaaattattccaattatt |
38090732 |
T |
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