View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_141 (Length: 206)

Name: NF9444_low_141
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_141
NF9444_low_141
[»] chr5 (18 HSPs)
chr5 (19-191)||(10217504-10217674)
chr5 (39-188)||(11049415-11049564)
chr5 (33-189)||(10611006-10611162)
chr5 (31-190)||(10604046-10604205)
chr5 (32-168)||(10717718-10717854)
chr5 (32-168)||(10741477-10741613)
chr5 (32-168)||(10763911-10764047)
chr5 (53-191)||(10747770-10747908)
chr5 (32-168)||(10601150-10601286)
chr5 (32-191)||(10564322-10564481)
chr5 (32-186)||(7192300-7192454)
chr5 (32-174)||(10652971-10653113)
chr5 (32-149)||(19606662-19606779)
chr5 (58-186)||(10660845-10660973)
chr5 (32-168)||(9837106-9837242)
chr5 (38-171)||(10550094-10550227)
chr5 (32-168)||(10589205-10589341)
chr5 (46-168)||(10558229-10558351)
[»] chr2 (1 HSPs)
chr2 (32-168)||(17924181-17924317)
[»] chr6 (5 HSPs)
chr6 (32-168)||(12906485-12906621)
chr6 (32-168)||(12931574-12931710)
chr6 (32-168)||(12947939-12948075)
chr6 (32-168)||(12898865-12899001)
chr6 (32-168)||(12957373-12957509)
[»] chr3 (1 HSPs)
chr3 (32-168)||(31467940-31468076)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 10217674 - 10217504
Alignment:
Q  19 atattcctatcatattggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaa 118  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217674 atattcctatcat--tggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaa 10217577  T
Q  119 ggtcttttatatttagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctctg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217576 ggtcttttatatttagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctctg 10217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 11049564 - 11049415
Alignment:
Q  39 aatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacct 138  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11049564 aatgcgtaagcttcgaataccttctcttgcaagggaactccttcaatggaacaataccgtcctctttggcttcgctcaaaggtcttttatatttagacct 11049465  T
Q  139 ttccagaaatcaattttatggatcaattccaaatgtcatacagaatatct 188  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  11049464 ttctagaaatcaattttatggatcaattccaaatgttatacagaatatct 11049415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 10611006 - 10611162
Alignment:
Q  33 ttggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatattt 132  Q
    ||||||||||  |||| || |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||  ||||||    
T  10611006 ttggtgaatgtataagtttagaataccttcttttgcaaggtaactccttcaatggaacaataccttcctctttggcttctctcaaaggtcttcgatattt 10611105  T
Q  133 agacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctc 189  Q
    ||||||||| | ||||||||| | ||||||||||||  |||| || ||| |||||||    
T  10611106 agacctttcaacaaatcaattgtctggatcaattcctgatgttatgcaggatatctc 10611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 10604046 - 10604205
Alignment:
Q  31 tattggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatat 130  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||   ||||    
T  10604046 tattggtgaatgcataagcttagaataccttcgtttgcaagggaactcattcaacggaacaataccatcctcttttgcttctctcaaaggtctacaatat 10604145  T
Q  131 ttagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctct 190  Q
    |||||  |||| ||||||||||| |||||| |||||||  ||||  | ||||||||||||    
T  10604146 ttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctct 10604205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 10717854 - 10717718
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||| | ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| | | |   |||||    
T  10717854 attggtgaatgcatgagcttggaatatcttcatttggaagggaactccatcaatggaacaataccatcctctttggcttctctcaaggctttaagatatt 10717755  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| || ||| |||||||    
T  10717754 tagacctttcaagaaatcaattgtacggaccaattcc 10717718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 10741613 - 10741477
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||||||||||  || ||| ||||||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||  |  ||    
T  10741613 attggtgaatgcacaaccttagaataccttcaattgcaagggaactccttcagcggaacaataccatcctctatggcttctctcaaaggtcttcaaagtt 10741514  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  10741513 tagacctttcaagaaatcaattgtctggatcaattcc 10741477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 10764047 - 10763911
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||||||||||  || ||| ||||||||||| |||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||  |  ||    
T  10764047 attggtgaatgcacaaccttagaataccttcaattgcaagggaactccttcagcggaacaataccatcctctatggcttctctcaaaggtcttcaaagtt 10763948  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  10763947 tagacctttcaagaaatcaattgtctggatcaattcc 10763911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 10747908 - 10747770
Alignment:
Q  53 gaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaat 152  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||  | ||||||||||||| ||||||| ||    
T  10747908 gaataccttcacctgcaagggaactccttcaatggaacaataccatcctctttggcttctctcgaaggtcttcaacatttagacctttcaagaaatcgat 10747809  T
Q  153 tttatggatcaattccaaatgtcatacagaatatctctg 191  Q
    | | ||| ||||||||  |||| || || ||||||||||    
T  10747808 tgtctgggtcaattcctgatgttatgcaaaatatctctg 10747770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 10601150 - 10601286
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||||||||  |||||||| ||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||| | |||||||||||   |||||    
T  10601150 attggtgaatatgtaagcttagaataccttcatttgcaagagaattctttcaacggaacaataccatcctctttggctgctctcaaaggtctacaatatt 10601249  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    ||||  |||| ||||||||||| |||||| |||||||    
T  10601250 tagatatttcaagaaatcaattgtatggaccaattcc 10601286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 10564322 - 10564481
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||| |||||  ||||||| ||||| |||   |||||||||||| |||||||  |||||||||| |||||| ||||||| ||||||||||||  |||||    
T  10564322 attggcgaatgtataagcttagaatatcttatgttgcaagggaacgccttcaacagaacaataccgtcctctatggcttctctcaaaggtcttcgatatt 10564421  T
Q  132 tagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctctg 191  Q
    |||||||||| ||||||||||| | ||||||||||||  |||| || || ||||||||||    
T  10564422 tagacctttcaagaaatcaattgtctggatcaattcctgatgttatgcaaaatatctctg 10564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 7192300 - 7192454
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||| |||||| || |||| ||||||||   ||||||||| ||||||||||| ||||| ||||||||||| ||||||||  | ||| |||||  |||||    
T  7192300 attggcgaatgcatacgcttagaatacctctttttgcaaggaaactccttcaacggaaccataccatcctcattggcttcagttaaaagtcttcaatatt 7192399  T
Q  132 tagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatat 186  Q
    ||||||| || |||||||  || |||||| ||||||| |||||  ||||||||||    
T  7192400 tagacctgtcaagaaatcggttgtatggaccaattcctaatgttctacagaatat 7192454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 10653113 - 10652971
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||| ||  ||| |||||||||  ||||||||||||||| ||||| ||||| || |||||| | |||||||| || |||||||||  |||||    
T  10653113 attggtgaatgcatagtcttagaatacctttctttgcaagggaactcgttcaacggaaccattccatccacattggcttcacttaaaggtcttcaatatt 10653014  T
Q  132 tagacctttccagaaatcaattttatggatcaattccaaatgt 174  Q
    ||||| | || |||||||  || |||||| |||||||||||||    
T  10653013 tagacttgtcaagaaatcggttgtatggaccaattccaaatgt 10652971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 19606779 - 19606662
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||| ||||||| ||||| ||| |||| ||||||||||||||  | ||||  |||||||||||||| ||||| || | |||||||  |||||    
T  19606779 attggtgaatgcataagcttagaatatctttattttcaagggaactcctttcacggaatcataccatcctctttagcttctcttagaggtcttcgatatt 19606680  T
Q  132 tagacctttccagaaatc 149  Q
    ||||||| || |||||||    
T  19606679 tagacctatcaagaaatc 19606662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 10660973 - 10660845
Alignment:
Q  58 ccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttat 157  Q
    |||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||  |||| ||||| | ||  |||||| ||| | |    
T  10660973 cctttatttgcaagggaactctttcaacggaaccataccatcctcattggcttcacttaaaggtcttcaatatctagacttgtcaggaaatcgattgtct 10660874  T
Q  158 ggatcaattccaaatgtcatacagaatat 186  Q
    ||| | |||||||||||  ||||||||||    
T  10660873 ggaccgattccaaatgttctacagaatat 10660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 9837242 - 9837106
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactc-cttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatat 130  Q
    |||||||||||| |||| || ||||||||||| || || |||||||| |||||  ||||| ||||| ||| ||||||| || ||||||| ||||  ||||    
T  9837242 attggtgaatgcataagtttagaataccttcacttacaggggaactctcttcac-ggaaccataccttccactttggcatctctcaaagttcttcaatat 9837144  T
Q  131 ttagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||| | || |||||||| || | ||||||||||||    
T  9837143 ttagacatgtctagaaatcagttgtctggatcaattcc 9837106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 10550094 - 10550227
Alignment:
Q  38 gaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacc 137  Q
    |||||| ||||||| |||||||||  ||||  |||||| || ||||||||||  ||||||||||||||||  || ||||||||||||  |   |||||||    
T  10550094 gaatgcttaagcttagaataccttattttgacagggaattcattcaatggaagcataccatcctctttggaatctctcaaaggtcttcgagtgttagacc 10550193  T
Q  138 tttccagaaatcaattttatggatcaattccaaa 171  Q
    | || ||||| ||||| |  ||||||||||||||    
T  10550194 tctcaagaaaccaattatccggatcaattccaaa 10550227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 10589341 - 10589205
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||| || ||| ||| ||| |||||||||||||||||||| |||   |||   ||||||||||| | | ||||||| || ||||||||||||  |||||    
T  10589341 attggggattgcataaacttagaataccttcatttgcaaggaaaccttttcctcggaacaatacctttcactttggcatctctcaaaggtcttcaatatt 10589242  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    ||||| | || |||||||| || | ||||||||||||    
T  10589241 tagacatgtcaagaaatcagttgtctggatcaattcc 10589205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 10558229 - 10558351
Alignment:
Q  46 aagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccaga 145  Q
    |||||| |||||||||  ||||||||| || |||||| ||  ||  ||||| |||||||||||||   | | |||||||  |||||||||| | || |||    
T  10558229 aagcttagaatacctttttttgcaaggaaattccttccatcaaatcataccttcctctttggcttatataagaggtcttcgatatttagacatgtcaaga 10558328  T
Q  146 aatcaattttatggatcaattcc 168  Q
    |||||||| | ||||||||||||    
T  10558329 aatcaattgtctggatcaattcc 10558351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 17924317 - 17924181
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||  ||||||| |||||  ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||  |||||    
T  17924317 attggtgaatgtataagcttagaatatattcatttgcaaaggaactccttcaacggaacaataccgtcctctttggcttctctcaaaggtcttcgatatt 17924218  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  17924217 tagacctttcaagaaatcaattgtctggatcaattcc 17924181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 12906485 - 12906621
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||   |||||| |||||  ||||||||||| |||||||||| || ||||||||||| |||||||||||||| ||||||||||||  |||||    
T  12906485 attggtgaatgtacaagcttagaatatattcatttgcaaaggaactcctttaacggaacaataccgtcctctttggcttctctcaaaggtcttcgatatt 12906584  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  12906585 tagacctttcaagaaatcaattgtctggatcaattcc 12906621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 12931574 - 12931710
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||   |||||| |||||  ||||||||||| ||||||||||||| ||||||||||| ||||||||| |||  ||||||||||||  |||||    
T  12931574 attggtgaatgtacaagcttagaatatattcatttgcaaaggaactccttcaacggaacaataccgtcctctttgacttttctcaaaggtcttcgatatt 12931673  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  12931674 tagacctttcaagaaatcaattgtctggatcaattcc 12931710  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 12947939 - 12948075
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||   |||||| |||||  ||||||||||| ||||||||||||| ||||||||||| ||||||||| |||  ||||||||||||  |||||    
T  12947939 attggtgaatgtacaagcttagaatatattcatttgcaaaggaactccttcaacggaacaataccgtcctctttgacttttctcaaaggtcttcgatatt 12948038  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  12948039 tagacctttcaagaaatcaattgtctggatcaattcc 12948075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 12898865 - 12899001
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||   |||| | |||||  ||| ||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||||||||  |||||    
T  12898865 attggtgaatgtacaagcatagaatatattcttttgcaaaggaactccttcaacggaacaataccgtcctctttggcttctcttaaaggtcttcaatatt 12898964  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    ||||| |||| ||||||||||| | ||||||||||||    
T  12898965 tagacttttcaagaaatcaattgtctggatcaattcc 12899001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 12957373 - 12957509
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    |||||||||||   || ||| |||||  ||| ||||||| |||||  |||||||||||||||||| |||||||| ||||| ||||||||||||  |||||    
T  12957373 attggtgaatgtacaatcttagaatatattcgtttgcaaaggaacatcttcaatggaacaataccgtcctctttagcttctctcaaaggtcttcaatatt 12957472  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    ||||| |||| ||||||||||| | ||||||||||||    
T  12957473 tagacgtttcaagaaatcaattgtctggatcaattcc 12957509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 31468076 - 31467940
Alignment:
Q  32 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 131  Q
    ||||| ||||||||||||||||| |||||| |||||||||| || |||||| |||||   |||||| ||||| | ||||| || ||||| |||  | |||    
T  31468076 attggggaatgcgtaagcttggagtacctttatttgcaaggaaattccttccatggagtcataccaacctctctagcttcactgaaaggccttcaacatt 31467977  T
Q  132 tagacctttccagaaatcaattttatggatcaattcc 168  Q
    ||||||| ||  |||| || || | ||||||||||||    
T  31467976 tagacctatcacgaaaccacttgtctggatcaattcc 31467940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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