View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_low_143 (Length: 204)
Name: NF9444_low_143
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_143 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20621788 - 20621839
Alignment:
| Q |
118 |
ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20621788 |
ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc |
20621839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 17664444 - 17664393
Alignment:
| Q |
118 |
ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17664444 |
ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc |
17664393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 17683600 - 17683549
Alignment:
| Q |
118 |
ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17683600 |
ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc |
17683549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 65510 - 65470
Alignment:
| Q |
129 |
tgtcaataagtccgaaggttttcggcagtggtccaaatttc |
169 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
65510 |
tgtcaatgagtccgaaagttttcggcagtggtccaaatttc |
65470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39951899 - 39951935
Alignment:
| Q |
1 |
accatattaagccgcattattctgctataaatcaata |
37 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39951899 |
accatattaagccgcattattctactataaatcaata |
39951935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 19223811 - 19223857
Alignment:
| Q |
123 |
caatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc |
169 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
19223811 |
caatgttgtcaataagtccgaaagttttcagcaagggtccaaatttc |
19223857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University