View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_145 (Length: 202)
Name: NF9444_low_145
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_145 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 40844937 - 40844764
Alignment:
| Q |
15 |
tgttgtgcaaacataagatcaacttaaatttttacaaggacaggcatttttcaaggaacaccctcagttcacaaagaatgatttttatattaccggagag |
114 |
Q |
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| T |
40844937 |
tgttgtgcaaacataagatcaacttaaatttttacaatgacaggcatttttcaaggaacaccctcagttcacaaagaatgatttttatattaccggagag |
40844838 |
T |
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| Q |
115 |
tcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattca |
188 |
Q |
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| T |
40844837 |
tcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattca |
40844764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 40850996 - 40850856
Alignment:
| Q |
48 |
acaaggacaggcatttttcaaggaacaccctcagttcacaaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgca |
147 |
Q |
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| T |
40850996 |
acaatgacaggcatttttcaaggaacaccctcagttcacaaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgca |
40850897 |
T |
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| Q |
148 |
tctagagttcaccaaggaaacaaagcaaaagaaggaattca |
188 |
Q |
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| T |
40850896 |
tctagagttcaccaaggaaacaaagcaaaagaaggaattca |
40850856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 40840561 - 40840387
Alignment:
| Q |
15 |
tgttgtgcaaacataagatcaacttaaatttttacaaggacaggcatttttcaaggaacaccctcagttcacaaagaatgatttttatattaccggagag |
114 |
Q |
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||||||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
40840561 |
tgttgtgcaaacataagctcaatttaaatttttacaataacagacattttttaaggaacaccctcagttcgctgagaatgacttttatattaccggagag |
40840462 |
T |
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| Q |
115 |
tcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattcat |
189 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40840461 |
tcatacgctggacattacgttccagcttttgcatccagagttcaccaaggaaacaaagcaaaagaaggaattcat |
40840387 |
T |
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