View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_147 (Length: 201)
Name: NF9444_low_147
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_147 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 38085817 - 38085630
Alignment:
| Q |
14 |
cataggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaa |
113 |
Q |
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| T |
38085817 |
cataggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaa |
38085718 |
T |
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| Q |
114 |
atatgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaa |
201 |
Q |
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| T |
38085717 |
atatgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaa |
38085630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 38155820 - 38155641
Alignment:
| Q |
22 |
ttggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgc |
121 |
Q |
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| T |
38155820 |
ttggattttgtgatatcagaggcaagaaaatatggagtgaaacttatactgagcttagtgaataattggaatgattttggaggcaaaaagaaatatgtgc |
38155721 |
T |
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| Q |
122 |
agtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaa |
201 |
Q |
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| T |
38155720 |
agtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaaccctcttgttaagcaatactacaaa |
38155641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 38142480 - 38142295
Alignment:
| Q |
16 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
115 |
Q |
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| T |
38142480 |
tagggattggattttgtgatatcagaggcaaacaaatatggagtgaaacttatactgagcttagtgaataattggaatgattttggaggcaaaaagaaat |
38142381 |
T |
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| Q |
116 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaa |
201 |
Q |
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| T |
38142380 |
atgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaatcctcttgttaagcaatactacaaa |
38142295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 38110914 - 38110729
Alignment:
| Q |
16 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
115 |
Q |
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| T |
38110914 |
tagggattagattttgtgatatcagagtcaaaaaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaat |
38110815 |
T |
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| Q |
116 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaa |
201 |
Q |
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| T |
38110814 |
atgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaa |
38110729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 38090789 - 38090613
Alignment:
| Q |
25 |
gattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagt |
124 |
Q |
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| T |
38090789 |
gattttgtgatatcagaggcaagcaaatatggagtgaaattgatactaagcttagccaataattggaataattttggaggcaaaaacaaatatgttcaat |
38090690 |
T |
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| Q |
125 |
gggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaa |
201 |
Q |
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| T |
38090689 |
gggcaagagaacacggtcataacataaaaaatgacgacgacttctttacacaccctcttgttaagcaatactacaaa |
38090613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 45892272 - 45892425
Alignment:
| Q |
16 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
115 |
Q |
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| T |
45892272 |
tagggattggattttgtgatttcagaagcagggaagaatggagtgcagttgatactaagtttagtgaataattggaatgattatggtggaaaaagtcaat |
45892371 |
T |
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| Q |
116 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttct |
169 |
Q |
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| T |
45892372 |
atgttaaatgggccaaagaacagggtcaaaacatcaacaatgatgatgatttct |
45892425 |
T |
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