View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_148 (Length: 201)
Name: NF9444_low_148
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_148 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 23031934 - 23031764
Alignment:
| Q |
12 |
cagagaattaaaacaaacagtcagtgacataaagcatgaagtccatcaccaactagaacacactcgccaaacgcgaagaagcgttcaaggaatcgcaaaa |
111 |
Q |
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| T |
23031934 |
cagagaattaaaacaaacagtcagtgacataaagcatgaagtccatcaccaactagaacacactcgccaaacgcgaagaagcgttcaaggaatcgcaaaa |
23031835 |
T |
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| Q |
112 |
cgtctcaacaaaatgcacacagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcat |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031834 |
cgtctcaacaaaatgcacacagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcat |
23031764 |
T |
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Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 41065493 - 41065348
Alignment:
| Q |
19 |
ttaaaacaaacagtcagtgacataaagcatgaagtccatcaccaactagaacacactcgccaaacgcgaagaagcgttcaaggaatcgcaaaacgtctca |
118 |
Q |
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||||| ||||| || || ||||||||||| || || ||| ||||| |||||||||| ||||| || |||| | | ||||||||||||||||||||| ||| |
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| T |
41065493 |
ttaaagcaaactgtaagcgacataaagcacgaggtacattaccaattagaacacacacgccagacacgaaaacgtgttcaaggaatcgcaaaacgtatca |
41065394 |
T |
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| Q |
119 |
acaaaatgcacacagaaggactcaacaatgcaataaactccacaac |
164 |
Q |
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|||| ||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
41065393 |
acaagatgaatacagaaggactcaacaatgcaataaactcaacaac |
41065348 |
T |
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