View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_16 (Length: 491)
Name: NF9444_low_16
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 34705169 - 34705620
Alignment:
| Q |
19 |
ctaaaccccttaaaaagcggtggctataactatttcctatattgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatga |
118 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34705169 |
ctaaaccccttaaaaagcggtggctgtaactatttcctatattgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatga |
34705268 |
T |
|
| Q |
119 |
catgtactatatcgcggtgtcatgacaactgttgcaattattgactgcatcggtgataacacatagatctgtggacgtatcatcatagaccgtctaacat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
34705269 |
catgtactatatcgcggtgtcatgacaactgttgca-------------tcggtgataacgcatagatctgtggacgtatcatcatattccgtctaacat |
34705355 |
T |
|
| Q |
219 |
tgaatctcattgtttaataagccaactgcaattccattttagcaggcttctgttatgctctcatgatgcnnnnnnnnncctccaaatggttgagtgttga |
318 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
34705356 |
taaatctcattgtttaataagccaactgcaattccattttagcaggcttctgttatgctccaatgatgctttttttt-cctccaaatggttgagtgttga |
34705454 |
T |
|
| Q |
319 |
tgaagaggaaaaatggtttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgtttatataaatgtcactaatttgtgc |
418 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34705455 |
tgaagcggacaaatgatttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgtttatataaatgtcactaatttgtgc |
34705554 |
T |
|
| Q |
419 |
ttttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgccggtaaacaccaa |
484 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34705555 |
gtttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgccagtaaacaccaa |
34705620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 28548032 - 28547581
Alignment:
| Q |
19 |
ctaaaccccttaaaaagcggtggctataactatttcctatattgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatga |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28548032 |
ctaaaccccttaaaaagcggtggctgtaactatttcctatattgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatga |
28547933 |
T |
|
| Q |
119 |
catgtactatatcgcggtgtcatgacaactgttgcaattattgactgcatcggtgataacacatagatctgtggacgtatcatcatagaccgtctaacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
28547932 |
catgtactatatcgcggtgtcatgacaactgttgca-------------tcggtgataacgcatagatctgtggacgtatcatcataaaccgtctaacat |
28547846 |
T |
|
| Q |
219 |
tgaatctcattgtttaataagccaactgcaattccattttagcaggcttctgttatgctctcatgatgcnnnnnnnnncctccaaatggttgagtgttga |
318 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
28547845 |
taaatctcattgtttaataagccaactgcaattccattttagcaggcttctgttatgctccaatgatgctttttttt-cctccaaatggttgagtgttga |
28547747 |
T |
|
| Q |
319 |
tgaagaggaaaaatggtttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgtttatataaatgtcactaatttgtgc |
418 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28547746 |
tgaagcggacaaatgatttctggtatggtgctacgttattttgtggtgatttctgacgaatgtataaacagttgtttatataaatgtcactaatttgtgc |
28547647 |
T |
|
| Q |
419 |
ttttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgccggtaaacaccaa |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28547646 |
gtttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgccagtaaacaccaa |
28547581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 41868378 - 41868829
Alignment:
| Q |
19 |
ctaaaccccttaaaaagcggtggctataactatttcctatattgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatga |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41868378 |
ctaaaccccttaaaaagcggtggctgtaactatttcctatattgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatga |
41868477 |
T |
|
| Q |
119 |
catgtactatatcgcggtgtcatgacaactgttgcaattattgactgcatcggtgataacacatagatctgtggacgtatcatcatagaccgtctaacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
41868478 |
catgtactatatcgcggtgtcatgacaactgttgca-------------tcggtgataacgcatagatctgtggacgtatcatcataaaccgtctaacat |
41868564 |
T |
|
| Q |
219 |
tgaatctcattgtttaataagccaactgcaattccattttagcaggcttctgttatgctctcatgatgcnnnnnnnnncctccaaatggttgagtgttga |
318 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
41868565 |
taaatctcattgtttaataagccaactgcaattccattttagcaggcttctgttatgctccaatgatgctttttttt-cctccaaatggttgagtgttga |
41868663 |
T |
|
| Q |
319 |
tgaagaggaaaaatggtttctggtatggtgctacgttattttgtggtgatttctgtcgaatgtataaacagttgtttatataaatgtcactaatttgtgc |
418 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41868664 |
tgaagcggacaaatgatttctggtatggtgctacgttattttgtggtgatttctgccgaatgtataaacagttgtttatataaatgtcactaatttgtgc |
41868763 |
T |
|
| Q |
419 |
ttttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgccggtaaacaccaa |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41868764 |
gtttgtttttgttcagaccctttcatatgacagagttctgaactctgttatgccagtaaacaccaa |
41868829 |
T |
|
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